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BaseInfo

ncRNA ID novel_osa_miR3547
Species Oryza sativa
Class miRNA
Genome position Chr4:5578756-5578835 [-]
Reference genome IRGSP-1.0
Source SRR2040391;SRR1738210
Length 21
Mature sequence(if miRNA) 1 - UUAAAUGGACCGCACGCGAAA - 21
Stem-loop(if miRNA) --                         C   C A     U
  UCGUGUGCGGUCCAUUUAAGAGGAC GCA G GAAAA C
  ||||||||||||||||||||||||| ||| | ||||| G
  AGCGCACGCCAGGUAAAUUCUCCUG CGU C CUUUU A
AA                         U   A -     U
Stem-loop sequence UCGUGUGCGGUCCAUUUAAGAGGACCGCACGAGAAAAUCGAUUUUUCCAUGCUGUCCUCUUAAAUGGACCGCACGCGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288261.1
ncRNA:21   AAAGCGCACGCCAGGUAAAUU   1
  *|||||*||||||||||*|||
targets:3164   CUUCGCAUGCGGUCCAUAUAA   3184

2.5 Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence NA coding protein psRNATarget