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BaseInfo

ncRNA ID	novel_osa_miR3546
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:34640636-34640839 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	24
Mature sequence(if miRNA)	1 - AAAAUAUACUAGAGUUGUGGAGCU - 24
Stem-loop(if miRNA)	--      U       UU               G    CUC    A       C           CU                   U    CUG        A   AAAAUA ACUAGAG  GUGGAGCUGGGUUUA ACAG   CAGA CUCCACU CAGACUCAACU  UGGAGCUAAAUUUAGGAGU GGAG   UACCAAAU G   |||||| |||||||  ||||||||||||||| ||||   |||| ||||||| |||||||||||  ||||||||||||||||||| ||||   ||||||||   UUUUAU UGGUCUC  CACCUCGACUUAAAU UGUC   GUUU GAGGUGA GUCUGGGUUGA  AUUUCGAUUUAAAUCCUCA CCUC   AUGGUUUA G UG      U       --               A    AAA    C       A           AG                   U    AAA        C
Stem-loop sequence	AAAAUAUACUAGAGUUGUGGAGCUGGGUUUAGACAGCUCCAGAACUCCACUCCAGACUCAACUCUUGGAGCUAAAUUUAGGAGUUGGAGCUGUACCAAAUAGGCAUUUGGUAAAACUCCUACUCCUAAAUUUAGCUUUAGAAGUUGGGUCUGAAGUGGAGCUUUGAAACUGUAUAAAUUCAGCUCCACCUCUGGUUUAUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121068.1	ncRNA:24   UCGAGGUGUUGAGAUCAUAUAAAA   1   ||||||||||||||||||*||||| targets:1242   AGCUCCACAACUCUAGUACAUUUU   1265 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023061D24, full insert sequence	NA	coding protein	psRNATarget
XM_015756167.1	ncRNA:24   UCGAGGUGUUGAGAUCAUAUAAAA   1   ||||=|||||||||||||*||||| targets:748   AGCUUCACAACUCUAGUACAUUUU   771 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group EG45-like domain containing protein (LOC107276928), mRNA	EG45-like domain containing protein(LOC107276928)	coding protein	psRNATarget
XM_015775467.1	ncRNA:24   UCGAGGUGUUGAGAUCAUAUAAAA   1   |||||=||||||||||||*||||| targets:1873   AGCUCUACAACUCUAGUACAUUUU   1896 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group elongation of fatty acids protein 3-like (LOC4333830), mRNA	elongation of fatty acids protein 3-like(LOC4333830)	coding protein	psRNATarget