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BaseInfo

ncRNA ID	novel_osa_miR3544
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:208486-208612 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	22
Mature sequence(if miRNA)	106 - UUAGGAUAUACGCGAGACUGAG - 127
Stem-loop(if miRNA)	--  -      C  A       AGC     -A      C    UG   --C    ---C  U         CA UCUCGU UA AUCCUGA   ACCAA  AUCCCC UACC  GCG   GCCA    UG CGACGUU   || |||||| || |||||||   |||||  |||||| ||||  |||   ||||    || ||||||U   GU AGAGCG AU UAGGAUU   UGGUU  UAGGGG AUGG  CGU   UGGU    AC GCUGUAG GA  C      C  A       --A     GC      U    UA   UUA    CUUA  -
Stem-loop sequence	CAUCUCGUCUAAAUCCUGAAGCACCAAAAUCCCCCUACCUGGCGCGCCACUGUCGACGUUUGAUGUCGCAAUUCUGGUAUUUGCAUGGUAUGGGGAUCGUUGGUAUUAGGAUAUACGCGAGACUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015766918.1	ncRNA:22   GAGUCAGAGCGCAUAUAGGAUU   1   |||||||||||||||||||||= targets:2569   CUCAGUCUCGCGUAUAUCCUAG   2590 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4325115), mRNA	putative disease resistance protein RGA1(LOC4325115)	coding protein	psRNATarget
AK288376.1	ncRNA:22   GAGUCAGAGCGCAUAUAGGAUU   1   |||||||||||||||||||||= targets:2575   CUCAGUCUCGCGUAUAUCCUAG   2596 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090026K04, full insert sequence	NA	coding protein	psRNATarget
AK288748.1	ncRNA:22   GAGUCAGAGCGCAUAUAGGAUU   1   |||||||||||||||||||||= targets:397   CUCAGUCUCGCGUAUAUCCUAG   418 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090064M14, full insert sequence	NA	coding protein	psRNATarget
AK288360.1	ncRNA:22   GAGUCAGAGCGCAUAUAGGAUU   1   |||||||||||||||||=|||= targets:4708   CUCAGUCUCGCGUAUAUUCUAG   4729 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024N04, full insert sequence	NA	coding protein	psRNATarget