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BaseInfo

ncRNA ID	novel_osa_miR3542
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:20109450-20109509 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	24
Mature sequence(if miRNA)	1 - AUAUUCUAGUACUAUGAAUCUGGA - 24
Stem-loop(if miRNA)	--     C             CU      A   AUAUU UAGUACUAUGAAU  GGAUAU U   ||||| |||||||||||||  ||||||   UGUAG AUUAUGAUACUUA  CCUAUA G UG     U             AU      U
Stem-loop sequence	AUAUUCUAGUACUAUGAAUCUGGAUAUAUGUAUAUCCUAAUUCAUAGUAUUAUGAUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB165005.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	0.0	Sequence 2669 from Patent EP2559767	NA	coding protein	psRNATarget
HI404544.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	0.0	Sequence 2669 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236674.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||| targets:43   UCCAGAUUCAUAGUACUAGAAUAU   66 Target Full Sequence	0.0	Sequence 2669 from Patent EP2985353	NA	coding protein	psRNATarget
JB164318.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	1.0	Sequence 1982 from Patent EP2559767	NA	coding protein	psRNATarget
HI403857.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	1.0	Sequence 1982 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235987.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||||||* targets:91   UCCAGAUUCAUAGUACUAGAAUAC   114 Target Full Sequence	1.0	Sequence 1982 from Patent EP2985353	NA	coding protein	psRNATarget
AK287908.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |=||||||||||||||||||||=| targets:1253   UUCAGAUUCAUAGUACUAGAAUGU   1276 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065212K06, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||=|||||||||=|||| targets:1112   UCCAGAUUCGUAGUACUAGGAUAU   1135 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK288793.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||||||||||=|||* targets:861   UCCAGAUUCAUAGUACUAGGAUAC   884 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||*|||||||||||| targets:450   UCCAGAUUCAUUGUACUAGAAUAU   473 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK063452.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||||||||||*|||||||||||| targets:152   UCCAGAUUCAUUGUACUAGAAUAU   175 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
AK242632.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||||||||||*||||| targets:358   UCCAGAUUCAUAGUACUAAAAUAU   381 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence	NA	coding protein	psRNATarget
AK107145.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   *=|||||||=|||||||||||||| targets:1251   AUCAGAUUCGUAGUACUAGAAUAU   1274 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   *=|||||||=|||||||||||||| targets:1291   AUCAGAUUCGUAGUACUAGAAUAU   1314 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
XM_015792994.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||=||||||||*|||||||||||| targets:1662   UCUAGAUUCAUUGUACUAGAAUAU   1685 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget
AK099750.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||=|||||||||=|||| targets:663   UCCAAAUUCGUAGUACUAGGAUAU   686 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013092A18, full insert sequence	NA	coding protein	psRNATarget
CT831784.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||=|||||||||=|||| targets:669   UCCAAAUUCGUAGUACUAGGAUAU   692 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA225J14, full insert sequence	NA	coding protein	psRNATarget
AK070309.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||||||||||||*|||| targets:641   UCCAAAUUCAUAGUACUAGUAUAU   664 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023047B15, full insert sequence	NA	coding protein	psRNATarget
CT832625.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1015   UCCAGAUUCACAGUACUAUAAUAU   1038 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103G17, full insert sequence	NA	coding protein	psRNATarget
AK119669.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1015   UCCAGAUUCACAGUACUAUAAUAU   1038 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-149-H06, full insert sequence	NA	coding protein	psRNATarget
AK119584.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1020   UCCAGAUUCACAGUACUAUAAUAU   1043 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-117-C06, full insert sequence	NA	coding protein	psRNATarget
AK069814.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1016   UCCAGAUUCACAGUACUAUAAUAU   1039 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031G07, full insert sequence	NA	coding protein	psRNATarget
CT832623.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1010   UCCAGAUUCACAGUACUAUAAUAU   1033 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053E04, full insert sequence	NA	coding protein	psRNATarget
CT832624.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1015   UCCAGAUUCACAGUACUAUAAUAU   1038 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053I23, full insert sequence	NA	coding protein	psRNATarget
XM_015783830.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||||||||*|||||||*||||| targets:1125   UCCAGAUUCACAGUACUAUAAUAU   1148 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337946 (LOC4337946), mRNA	uncharacterized LOC4337946(LOC4337946)	coding protein	psRNATarget
XM_015785966.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   |||-|||||=|||||||||=|||| targets:1489   UCC-GAUUCGUAGUACUAGGAUAU   1511 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable transcription factor KAN3 (LOC4341803), mRNA	probable transcription factor KAN3(LOC4341803)	coding protein	psRNATarget
AK288908.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||||*|||||||||||| targets:912   UCCAAAUUCAUCGUACUAGAAUAU   935 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081D16, full insert sequence	NA	coding protein	psRNATarget
XM_015789899.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||=||*||||||||||| targets:8   UCCAAAUUCGUAAUACUAGAAUAU   31 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271453 (LOC9271453), mRNA	uncharacterized LOC9271453(LOC9271453)	coding protein	psRNATarget
AK288920.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||||=||*||||||||||| targets:924   UCCAAAUUCGUAUUACUAGAAUAU   947 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015778783.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   *||||||*|||*|||||||||||| targets:19   CCCAGAUACAUUGUACUAGAAUAU   42 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At2g24330-like (LOC107278684), mRNA	uncharacterized protein At2g24330-like(LOC107278684)	coding protein	psRNATarget
AK120979.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   ||||*||*|||||||*|||||||| targets:2075   UCCAAAUCCAUAGUAGUAGAAUAU   2098 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023041P05, full insert sequence	NA	coding protein	psRNATarget
AK241576.1	ncRNA:24   AGGUCUAAGUAUCAUGAUCUUAUA   1   *|||-||||=||*||||||||||| targets:24   GCCA-AUUCGUAAUACUAGAAUAU   46 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065180O15, full insert sequence	NA	coding protein	psRNATarget