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BaseInfo

ncRNA ID novel_osa_miR3539
Species Oryza sativa
Class miRNA
Genome position Chr12:12690270-12690339 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2857732;SRR2857733;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - GGUUAAUCAUGGACUAAUUAGGCU - 24
Stem-loop(if miRNA) --        A     C      A   -------    G
  CCUAAUUA UUCGU AUUAGC CAU       GUGG U
  |||||||| ||||| |||||| |||       ||||
  GGAUUAAU AGGUA UAAUUG GUA       UACC U
UC        C     C      -   AUCACGA    A
Stem-loop sequence CCUAAUUAAUUCGUCAUUAGCACAUGUGGGUUACCAUAGCACUAAUGGUUAAUCAUGGACUAAUUAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK071825.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  |||||||||||||||||||||=||
targets:1331   AGCCUAAUUAGUCCAUGAUUAGCC   1354

1.5 Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence NA coding protein psRNATarget
AK064090.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  |||||||||||||||||||||=||
targets:1273   AGCCUAAUUAGUCCAUGAUUAGCC   1296

1.5 Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence NA coding protein psRNATarget
CT831729.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  |||||||||||||||||||||=||
targets:388   AGCCUAAUUAGUCCAUGAUUAGCC   411

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence NA coding protein psRNATarget
AK072891.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||*||||||||||||||||||=||
targets:888   AGACUAAUUAGUCCAUGAUUAGCC   911

1.5 Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence NA coding protein psRNATarget
CT834429.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:1378   AGCCUAAUUAAUCCAUGAUUAGCC   1401

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence NA coding protein psRNATarget
AK288638.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:315   AGCCUAAUUAAUCCAUGAUUAGCC   338

2.5 Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence NA coding protein psRNATarget
AK288576.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:1017   AGCCUAAUUAAUCCAUGAUUAGCC   1040

2.5 Oryza sativa Japonica Group cDNA, clone: J090049B14, full insert sequence NA coding protein psRNATarget
HI404345.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:113   AGCCUAAUUAAUCCAUGAUUAGCC   136

2.5 Sequence 2470 from Patent EP2074227 NA coding protein psRNATarget
JB164806.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:113   AGCCUAAUUAAUCCAUGAUUAGCC   136

2.5 Sequence 2470 from Patent EP2559767 NA coding protein psRNATarget
LQ236475.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:113   AGCCUAAUUAAUCCAUGAUUAGCC   136

2.5 Sequence 2470 from Patent EP2985353 NA coding protein psRNATarget
JB164693.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:110   AGCCUAAUUAAUCCAUGAUUAGCC   133

2.5 Sequence 2357 from Patent EP2559767 NA coding protein psRNATarget
LQ236362.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:110   AGCCUAAUUAAUCCAUGAUUAGCC   133

2.5 Sequence 2357 from Patent EP2985353 NA coding protein psRNATarget
HI404232.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*||||||||||=||
targets:110   AGCCUAAUUAAUCCAUGAUUAGCC   133

2.5 Sequence 2357 from Patent EP2074227 NA coding protein psRNATarget
AK241212.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=|||||||*||||||||||=||
targets:488   AGUCUAAUUAAUCCAUGAUUAGCC   511

2.5 Oryza sativa Japonica Group cDNA, clone: J065122M15, full insert sequence NA coding protein psRNATarget
AK288192.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  |||*|||||||||||||||||=|=
targets:2197   AGCAUAAUUAGUCCAUGAUUAGCU   2220

2.5 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
CT833487.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=|||||||*||||||||||=||
targets:840   AGUCUAAUUAAUCCAUGAUUAGCC   863

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence NA coding protein psRNATarget
CT830949.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=|||||||*||||||||||=||
targets:834   AGUCUAAUUAAUCCAUGAUUAGCC   857

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI219H14, full insert sequence NA coding protein psRNATarget
CT831158.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=|||||||*||||||||||=||
targets:653   AGUCUAAUUAAUCCAUGAUUAGCC   676

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence NA coding protein psRNATarget
XM_015790304.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=||||||||*|||||||||||=
targets:745   AGUCUAAUUAGGCCAUGAUUAACU   768

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA RING-H2 finger protein ATL45(LOC4344335) coding protein psRNATarget
AK062636.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=||||||||*|||||||||||=
targets:737   AGUCUAAUUAGGCCAUGAUUAACU   760

2.5 Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence NA coding protein psRNATarget
CT833754.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||=||||||||*|||||||||||=
targets:739   AGUCUAAUUAGGCCAUGAUUAACU   762

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence NA coding protein psRNATarget
CT837623.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  ||||||||||*|||||*|||||||
targets:592   AGCCUAAUUAAUCCAUAAUUAACC   615

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence NA coding protein psRNATarget
XM_015775655.1
ncRNA:24   UCGGAUUAAUCAGGUACUAAUUGG   1
  |*|||||*|||||||||||||=||
targets:1871   AACCUAACUAGUCCAUGAUUAGCC   1894

2.5 PREDICTED: Oryza sativa Japonica Group 4-hydroxyphenylacetaldehyde oxime monooxygenase (LOC4334792), mRNA 4-hydroxyphenylacetaldehyde oxime monooxygenase(LOC4334792) coding protein psRNATarget
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