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BaseInfo

ncRNA ID	novel_osa_miR3538
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:6064230-6064450 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	19
Mature sequence(if miRNA)	1 - GUUUUAAAAUGUUUGACGC - 19
Stem-loop(if miRNA)	--                CG             UAA               C    U         AUU   GUAAUUAUUAAUUCUUUUCCUAUCAUUUGAUUCAUUGU   GUUUUAAAAUGUUUGA  CCGUUGACUUUUU   ACAUGUUUGACCGUU GUCU AUUCAAAAA   UAA                                      U   ||||||||||||||||  |||||||||||||   ||||||||||||||| |||| |||||||||   |||                                      A   CAAAGUUUUAUAAACU  GGCAACUGAAAAA   UGUACAAACUGGCAA CAGA UAAGUUUUU   AAC                                      A GG                AU             UCG               A    U         GAA   ACUUUAUACAUUUUAAUAUACGGAUAUAUUUUUAUAUA
Stem-loop sequence	GUUUUAAAAUGUUUGACGCCGUUGACUUUUUUAAACAUGUUUGACCGUUCGUCUUAUUCAAAAAAUUUAAGUAAUUAUUAAUUCUUUUCCUAUCAUUUGAUUCAUUGUUAAAUAUAUUUUUAUAUAGGCAUAUAAUUUUACAUAUUUCACAAAAGUUUUUGAAUUAGACAAACGGUCAAACAUGUGCUAAAAAGUCAACGGUAUCAAAUAUUUUGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837831.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||||||| targets:330   GUGUCAAACAUUUUAAAAC   348 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069H22, full insert sequence	NA	coding protein	psRNATarget
AK242434.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:539   GUGUCAAACAUUUUGAAAC   557 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080093A09, full insert sequence	NA	coding protein	psRNATarget
XM_015757691.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:723   GUGUCAAAUAUUUUAAAAC   741 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group EMI domain-containing protein 1 (LOC4349449), transcript variant X2, mRNA	EMI domain-containing protein 1(LOC4349449)	coding protein	psRNATarget
XM_015757690.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:727   GUGUCAAAUAUUUUAAAAC   745 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group EMI domain-containing protein 1 (LOC4349449), transcript variant X1, mRNA	EMI domain-containing protein 1(LOC4349449)	coding protein	psRNATarget
CT829822.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:930   GUGUCAAAUAUUUUAAAAC   948 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B24, full insert sequence	NA	coding protein	psRNATarget
AK067104.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:949   GUGUCAAACAUUUUGAAAC   967 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013096C13, full insert sequence	NA	coding protein	psRNATarget
XM_015769093.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:942   GUGUCAAACAUUUUGAAAC   960 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328591 (LOC4328591), mRNA	uncharacterized LOC4328591(LOC4328591)	coding protein	psRNATarget
XM_015781137.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:25   GUGUCAAAUAUUUUAAAAC   43 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor-like protein kinase At4g00960 (LOC4335588), transcript variant X1, mRNA	putative receptor-like protein kinase At4g00960(LOC4335588)	coding protein	psRNATarget
AK073028.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:173   GUGUCAAACAUUUUGAAAC   191 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023144H14, full insert sequence	NA	coding protein	psRNATarget
XM_015769926.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:2645   GUGUCAAACAUUUUGAAAC   2663 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X3, mRNA	metal-nicotianamine transporter YSL2(LOC4330161)	coding protein	psRNATarget
XM_015769924.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:2682   GUGUCAAACAUUUUGAAAC   2700 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X1, mRNA	metal-nicotianamine transporter YSL2(LOC4330161)	coding protein	psRNATarget
AK070761.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:1725   GUGUCAAACAUUUUGAAAC   1743 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023067D20, full insert sequence	NA	coding protein	psRNATarget
AK287805.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:3440   GUGUCAAAUAUUUUAAAAC   3458 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065178C08, full insert sequence	NA	coding protein	psRNATarget
AK243013.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:640   GUGUCAAACAUUUUGAAAC   658 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090098F15, full insert sequence	NA	coding protein	psRNATarget
AK288852.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||||||||=|||| targets:4269   GUGUCAAACAUUUUGAAAC   4287 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075M07, full insert sequence	NA	coding protein	psRNATarget
AK289092.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   |=||||||=|||||||||| targets:5652   GUGUCAAAUAUUUUAAAAC   5670 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget
AK070818.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   **||||||||||||||||* targets:1387   CGGUCAAACAUUUUAAAAA   1405 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023068B12, full insert sequence	NA	coding protein	psRNATarget
XM_015761717.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   **||||||||||||||||* targets:1456   CGGUCAAACAUUUUAAAAA   1474 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group glucuronokinase 1 (LOC4350084), transcript variant X2, mRNA	glucuronokinase 1(LOC4350084)	coding protein	psRNATarget
XM_015761716.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   **||||||||||||||||* targets:1464   CGGUCAAACAUUUUAAAAA   1482 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group glucuronokinase 1 (LOC4350084), transcript variant X1, mRNA	glucuronokinase 1(LOC4350084)	coding protein	psRNATarget
AK102464.1	ncRNA:19   CGCAGUUUGUAAAAUUUUG   1   **||||||||||||||||* targets:495   CGGUCAAACAUUUUAAAAA   513 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033094D23, full insert sequence	NA	coding protein	psRNATarget