Search result

BaseInfo

ncRNA ID	novel_osa_miR3536
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:31406377-31406511 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	24
Mature sequence(if miRNA)	1 - AUUGGACUAAUUCACGAGACGAAU - 24
Stem-loop(if miRNA)	---AUU GA                  C         G     CG        UUAA   -U  GA   U       G  CUAAUUCACGAGACGAAU UUUUGAGUC AAUUA  UCAUAAUU    CAA  GU  UGC A       |  |||||||||||||||||| ||||||||| |||||  ||||||||    |||  ||  |||       C  GAUUAGGUGCUCUGCUUA AAAAUUCGG UUAAU  GGUAUUAA    GUU  CA  AUG C UUUACU UC                  A         A     UA        --UA   UU  -A   A
Stem-loop sequence	AUUGGACUAAUUCACGAGACGAAUCUUUUGAGUCGAAUUACGUCAUAAUUUUAACAAUGUGAUGCUACAGUAAACUUUUGAUAAUUAUGGAUUAAUUAGGCUUAAAAAAUUCGUCUCGUGGAUUAGCUCUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015769942.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||=||||||||||||||* targets:1833   AUUCGUCUUGUGAAUUAGUCCAAG   1856 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328317 (LOC4328317), mRNA	uncharacterized LOC4328317(LOC4328317)	coding protein	psRNATarget
AK288873.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:5629   AUUCGUCUCGCGAAUUAGUCCAAG   5652 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:683   AUUCGUCUCGCGAAUUAGUCCAAG   706 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100421.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1530   AUUCGUCUCGCGAAUUAGUCCAAG   1553 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence	NA	coding protein	psRNATarget
AK120728.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1502   AUUCGUCUCGCGAAUUAGUCCAAG   1525 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence	NA	coding protein	psRNATarget
AK073850.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1669   AUUCGUCUCGCGAAUUAGUCCAAG   1692 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
AK287827.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:2087   AUUCGUCUCGCGAAUUAGUCCAAG   2110 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1686   AUUCGUCUCGCGAAUUAGUCCAAG   1709 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
CT833304.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1335   AUUCGUCUCGCGAAUUAGUCCAAG   1358 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK103177.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||||*||||||||||||* targets:1330   AUUCGUCUCGCGAAUUAGUCCAAG   1353 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||||||=|*||||||||||||* targets:2745   AUUCGUCUUGCGAAUUAGUCCAAG   2768 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   UAAGCAGAGCACUUAAUCAGGUUA   1   ||||*|||||*||||||||||||* targets:1481   AUUCAUCUCGCGAAUUAGUCCAAG   1504 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget