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BaseInfo

ncRNA ID novel_osa_miR3535
Species Oryza sativa
Class miRNA
Genome position Chr12:14386695-14386752 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - CGGUCUGACCGGCAACACCUGCCC - 24
Stem-loop(if miRNA) --     C  -C    A  U     C  AU
  GCGGG UG  GCCG UC GACCG GC  U
  ||||| ||  |||| || ||||| ||  A
  CGUCC AC  CGGC AG CUGGC CG  C
CC     -  AA    C  U     -  CA
Stem-loop sequence GCGGGCUGCGCCGAUCUGACCGCGCAUUACACGCCGGUCUGACCGGCAACACCUGCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243562.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  ||||||||||||||||||||||||
targets:3618   GGGCAGGUGUUGCCGGUCAGACCG   3641

0.0 Oryza sativa Japonica Group cDNA, clone: J100080K03, full insert sequence NA coding protein psRNATarget
AK288470.1
ncRNA:24   CCCGUCCAC-AACGGCCAGUCUGGC   1
  ||||-||||-|||||||||||||||
targets:1083   GGGC-GGUGGUUGCCGGUCAGACCG   1106

2.0 Oryza sativa Japonica Group cDNA, clone: J090037J05, full insert sequence NA coding protein psRNATarget
XM_015786328.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2603   GAGCAAGGGUUGCCGGUCAGACCG   2626

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X3, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786334.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2510   GAGCAAGGGUUGCCGGUCAGACCG   2533

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X9, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786335.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2501   GAGCAAGGGUUGCCGGUCAGACCG   2524

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X10, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786326.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2473   GAGCAAGGGUUGCCGGUCAGACCG   2496

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X2, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786325.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2399   GAGCAAGGGUUGCCGGUCAGACCG   2422

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X1, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786336.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2386   GAGCAAGGGUUGCCGGUCAGACCG   2409

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X11, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786337.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2377   GAGCAAGGGUUGCCGGUCAGACCG   2400

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X12, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786329.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2334   GAGCAAGGGUUGCCGGUCAGACCG   2357

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X4, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786331.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2227   GAGCAAGGGUUGCCGGUCAGACCG   2250

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X6, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786333.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2218   GAGCAAGGGUUGCCGGUCAGACCG   2241

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X8, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786330.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2129   GAGCAAGGGUUGCCGGUCAGACCG   2152

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X5, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
XM_015786332.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  |*|||*|*||||||||||||||||
targets:2125   GAGCAAGGGUUGCCGGUCAGACCG   2148

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270091 (LOC9270091), transcript variant X7, mRNA uncharacterized LOC9270091(LOC9270091) coding protein psRNATarget
AK288446.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  **||||*|||||||||||*|||||
targets:2033   AUGCAGUUGUUGCCGGUCUGACCG   2056

2.5 Oryza sativa Japonica Group cDNA, clone: J090034L07, full insert sequence NA coding protein psRNATarget
XM_015782611.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  ||||**|||**|||||||||||||
targets:2199   GGGCUAGUGCGGCCGGUCAGACCG   2222

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280869 (LOC107280869), transcript variant X3, mRNA uncharacterized LOC107280869(LOC107280869) coding protein psRNATarget
XM_015782610.1
ncRNA:24   CCCGUCCACAACGGCCAGUCUGGC   1
  ||||**|||**|||||||||||||
targets:2177   GGGCUAGUGCGGCCGGUCAGACCG   2200

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280869 (LOC107280869), transcript variant X2, mRNA uncharacterized LOC107280869(LOC107280869) coding protein psRNATarget
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