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BaseInfo

ncRNA ID novel_osa_miR3533
Species Oryza sativa
Class miRNA
Genome position Chr3:16562722-16562801 [+]
Reference genome IRGSP-1.0
Source SRR2040391
Length 21
Mature sequence(if miRNA) 60 - UUAAAUGGACCGCACGCGAAA - 80
Stem-loop(if miRNA) --    A   A                            U
  UCGC UGC GUUUAUUUAAGAGGACCGCAUGGGAAAA C
  |||| ||| ||||||||||||||||||||||||||||
  AGCG ACG CAGGUAAAUUCUCCUGGCGUGCCCUUUU G
AA    C   C                            A
Stem-loop sequence UCGCAUGCAGUUUAUUUAAGAGGACCGCAUGGGAAAAUCGAUUUUCCCGUGCGGUCCUCUUAAAUGGACCGCACGCGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288261.1
ncRNA:21   AAAGCGCACGCCAGGUAAAUU   1
  *|||||*||||||||||*|||
targets:3164   CUUCGCAUGCGGUCCAUAUAA   3184

2.5 Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence NA coding protein psRNATarget