ncRNA ID | novel_osa_miR3533 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:16562722-16562801 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040391 |
Length | 21 |
Mature sequence(if miRNA) | 60 - UUAAAUGGACCGCACGCGAAA - 80 |
Stem-loop(if miRNA) |
--    A   A                            U   UCGC UGC GUUUAUUUAAGAGGACCGCAUGGGAAAA C   |||| ||| ||||||||||||||||||||||||||||   AGCG ACG CAGGUAAAUUCUCCUGGCGUGCCCUUUU G AA    C   C                            A |
Stem-loop sequence | UCGCAUGCAGUUUAUUUAAGAGGACCGCAUGGGAAAAUCGAUUUUCCCGUGCGGUCCUCUUAAAUGGACCGCACGCGAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288261.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence | NA | coding protein | psRNATarget |