Search result

BaseInfo

ncRNA ID novel_osa_miR3530
Species Oryza sativa
Class miRNA
Genome position Chr2:3652891-3653103 [+]
Reference genome IRGSP-1.0
Source SRR2040391
Length 24
Mature sequence(if miRNA) 190 - AGUUAACGGUGUCAUACAGGGAGU - 213
Stem-loop(if miRNA) -   AA     U                -AAU   C              C     AAAAAAAAUUA     U   -CAUU     UAU   --G      --UU   CA
 UUU  UGUAU ACGCCGUUGACUUUUU    CAA GUUUGACCAUUCGU UUAUU           UGUAA UAU     UAUUU   UGU   GCUUGA    UAU  U
 |||  ||||| ||||||||||||||||    ||| |||||||||||||| |||||           ||||| |||     |||||   |||   ||||||    |||
 GAG  ACAUA UGUGGCAAUUGAAAAA    GUU CAAACUGGUAAGCA AAUAA           ACGUU AUA     AUAAA   ACA   UGAAUU    AUA  C
U   GG     C                GCUU   A              A     GUUUAAAAGAC     U   UUUUU     --U   GUA      UUUU   AA
Stem-loop sequence UUUAAUGUAUUACGCCGUUGACUUUUUAAUCAACGUUUGACCAUUCGUCUUAUUAAAAAAAAUUAUGUAAUUAUCAUUUAUUUUAUUGUGGCUUGAUUUAUCAUCAAAUAUUUUUUAAGUAUGACAUAAAUAUUUUUAUAUUUGCACAGAAAAUUUGAAUAAAACGAAUGGUCAAACAUUGUUCGAAAAAGUUAACGGUGUCAUACAGGGAGU