ncRNA ID | novel_osa_miR3530 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:3652891-3653103 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040391 |
Length | 24 |
Mature sequence(if miRNA) | 190 - AGUUAACGGUGUCAUACAGGGAGU - 213 |
Stem-loop(if miRNA) |
-   AA     U                -AAU   C              C     AAAAAAAAUUA     U   -CAUU     UAU   --G      --UU   CA  UUU  UGUAU ACGCCGUUGACUUUUU    CAA GUUUGACCAUUCGU UUAUU           UGUAA UAU     UAUUU   UGU   GCUUGA    UAU  U  |||  ||||| ||||||||||||||||    ||| |||||||||||||| |||||           ||||| |||     |||||   |||   ||||||    |||  GAG  ACAUA UGUGGCAAUUGAAAAA    GUU CAAACUGGUAAGCA AAUAA           ACGUU AUA     AUAAA   ACA   UGAAUU    AUA  C U   GG     C                GCUU   A              A     GUUUAAAAGAC     U   UUUUU     --U   GUA      UUUU   AA |
Stem-loop sequence | UUUAAUGUAUUACGCCGUUGACUUUUUAAUCAACGUUUGACCAUUCGUCUUAUUAAAAAAAAUUAUGUAAUUAUCAUUUAUUUUAUUGUGGCUUGAUUUAUCAUCAAAUAUUUUUUAAGUAUGACAUAAAUAUUUUUAUAUUUGCACAGAAAAUUUGAAUAAAACGAAUGGUCAAACAUUGUUCGAAAAAGUUAACGGUGUCAUACAGGGAGU |