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BaseInfo

ncRNA ID	novel_osa_miR3528
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:14471281-14471444 [+]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	24
Mature sequence(if miRNA)	141 - AUGUGGCAAGUGAAUAAAUGAGAA - 164
Stem-loop(if miRNA)	--                                CC                                       UAAC  AAU   CUCAUUUAUUCAUUUGCCAUAUCAUCUUUCAU  UAGGUGGUAGCUUAUUUAAUACUACGGAUACCAUCCUAU    CC   U   ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    ||   GAGUAAAUAAGUGAACGGUGUAGUAGAAAGUA  AUCCACCGUCGAAUAAAUUAUGAUGCCUGUGGUAGGAUA    GG   A AA                                AA                                       ----  AUA
Stem-loop sequence	CUCAUUUAUUCAUUUGCCAUAUCAUCUUUCAUCCUAGGUGGUAGCUUAUUUAAUACUACGGAUACCAUCCUAUUAACCCAAUUAAUAGGAUAGGAUGGUGUCCGUAGUAUUAAAUAAGCUGCCACCUAAAAUGAAAGAUGAUGUGGCAAGUGAAUAAAUGAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790921.1	ncRNA:24   AAG-AGUAAAUAAGUGAACGGUGUA   1   |||-||||||||||||||||||||| targets:47   UUCCUCAUUUAUUCACUUGCCACAU   71 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327205 (LOC4327205), transcript variant X1, mRNA	uncharacterized LOC4327205(Os01g0740300)	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAG-AGUAAAUAAGUGAACGGUGUA   1   |||-||||||||||||||||||||| targets:2027   UUCCUCAUUUAUUCACUUGCCACAU   2051 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK119296.1	ncRNA:24   AAG-AGUAAAUAAGUGAACGGUGUA   1   |||-||||||||||||||||||||| targets:1414   UUCCUCAUUUAUUCACUUGCCACAU   1438 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-130-E06, full insert sequence	NA	coding protein	psRNATarget
AK121893.1	ncRNA:24   AAG-AGUAAAUAAGUGAACGGUGUA   1   |||-||||||||||||||||||||| targets:2160   UUCCUCAUUUAUUCACUUGCCACAU   2184 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033105C18, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AAGAGUAAAUAAGUGAACGGUGUA   1   ||||||*||||||||||||||||| targets:1850   UUCUCAGUUAUUCACUUGCCACAU   1873 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
XM_015773970.1	ncRNA:24   AAGAGUAAAUAAGUGAACGGUGUA   1   ||=|*||||||||||||||*|||* targets:788   UUUUGAUUUAUUCACUUGCAACAA   811 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable prolyl 4-hydroxylase 7 (LOC107277547), mRNA	probable prolyl 4-hydroxylase 7(LOC107277547)	coding protein	psRNATarget