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BaseInfo

ncRNA ID	novel_osa_miR3527
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5682307-5682359 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR4407953;SRR4407958;SRR4407959;SRR4407961;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AGGUUGAGUUUUUUUUGGACGGAG - 24
Stem-loop(if miRNA)	--             -         CC   CCGUCUAAAAAAA CUCAACCUA  C   ||||||||||||| |||||||||   GGCAGGUUUUUUU GAGUUGGAU  U GA             U         CC
Stem-loop sequence	CCGUCUAAAAAAACUCAACCUACCCUCCUAGGUUGAGUUUUUUUUGGACGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403737.1	ncRNA:24   GAGGCAGGUUUUUUUUGAGUUGGA   1   |||||||=|||||||||||||||| targets:6   CUCCGUCUAAAAAAAACUCAACCU   29 Target Full Sequence	1.0	Sequence 1862 from Patent EP2074227	NA	coding protein	psRNATarget
JB164198.1	ncRNA:24   GAGGCAGGUUUUUUUUGAGUUGGA   1   |||||||=|||||||||||||||| targets:6   CUCCGUCUAAAAAAAACUCAACCU   29 Target Full Sequence	1.0	Sequence 1862 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235867.1	ncRNA:24   GAGGCAGGUUUUUUUUGAGUUGGA   1   |||||||=|||||||||||||||| targets:6   CUCCGUCUAAAAAAAACUCAACCU   29 Target Full Sequence	1.0	Sequence 1862 from Patent EP2985353	NA	coding protein	psRNATarget
AK109291.1	ncRNA:24   GAGGCAGG-UUUUUUUUGAGUUGGA   1   ||||||||-|||||||||||||||| targets:582   CUCCGUCCCAAAAAAAACUCAACCU   606 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-188-C10, full insert sequence	NA	coding protein	psRNATarget
XM_015766455.1	ncRNA:24   GAGGCAGG-UUUUUUUUGAGUUGGA   1   ||||||||-|||||||||||||||| targets:108   CUCCGUCCCAAAAAAAACUCAACCU   132 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 3, plasma membrane-type (LOC4326507), mRNA	calcium-transporting ATPase 3, plasma membrane-type(LOC4326507)	coding protein	psRNATarget
CT831324.1	ncRNA:24   GAGGCAGGUUUUUUUUGAGUUGGA   1   ||||*|||*||||||||||||||| targets:553   CUCCAUCCCAAAAAAACUCAACCU   576 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017H21, full insert sequence	NA	coding protein	psRNATarget
XM_015788811.1	ncRNA:24   GAGGCAGGUUUUUUUUGAGUUGGA   1   ||||||||*||||*|||||||||| targets:931   CUCCGUCCUAAAAUAACUCAACCU   954 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277009 (LOC107277009), transcript variant X1, mRNA	uncharacterized LOC107277009(LOC107277009)	coding protein	psRNATarget