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BaseInfo

ncRNA ID	novel_osa_miR3526
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:20734205-20734395 [-]
Reference genome	IRGSP-1.0
Source	SRR2040391
Length	24
Mature sequence(if miRNA)	1 - AAACAGUUUGACUUUAAUUAAAGU - 24
Stem-loop(if miRNA)	--      C           U C                        U   U   G        ACAUUACCAAU   U       A UU    AU   UUUGGU AAAGUCAAACU G UUCAAAUUUGACUAAGUUUAUAGA AAA AUA UAAUAUUU           UAG UUUAUUA A  AAUA  U   |||||| ||||||||||| | |||||||||||||||||||||||| ||| ||| ||||||||           ||| ||||||| |  ||||   AAAUUA UUUCAGUUUGA C AAGUUUAAACUGGUUCAAAUAUCU UUU UAU AUUAUAAA           AUU AAAUAAU U  UUAU  A UG      A           - A                        U   U   A        AACUUUUUUCU   U       A UU    AA
Stem-loop sequence	UUUGGUCAAAGUCAAACUUGCUUCAAAUUUGACUAAGUUUAUAGAUAAAUAUAGUAAUAUUUACAUUACCAAUUAGUUUUAUUAAAUUAAUAAUUAAAUAUUUUUAUAAUAAAUUUAUCUUUUUUCAAAAAUAUUAAUAUUUUUUUCUAUAAACUUGGUCAAAUUUGAAACAGUUUGACUUUAAUUAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790873.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |||||==|*||||||||||||||| targets:879   ACUUUGGUCAAAGUCAAACUGUUU   902 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343452 (LOC4343452), mRNA	uncharacterized LOC4343452(LOC4343452)	coding protein	psRNATarget
CT837874.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |||||==|*||||||||||||||| targets:143   ACUUUGGUGAAAGUCAAACUGUUU   166 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
XM_015755259.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |||||==|*||||||||||||||| targets:804   ACUUUGGUCAAAGUCAAACUGUUU   827 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
AK288358.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |||||=*|*||||||||||||||| targets:894   ACUUUGCUCAAAGUCAAACUGUUU   917 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK099819.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |=|**||||*||||||||=||||| targets:3698   AUUAGAAUUCAAGUCAAAUUGUUU   3721 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013100I11, full insert sequence	NA	coding protein	psRNATarget
XM_015787631.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |=|**||||*||||||||=||||| targets:2068   AUUAGAAUUCAAGUCAAAUUGUUU   2091 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340346 (LOC4340346), mRNA	uncharacterized LOC4340346(LOC4340346)	coding protein	psRNATarget
AK062237.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |=|**||||*||||||||=||||| targets:1455   AUUAGAAUUCAAGUCAAAUUGUUU   1478 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-047-E04, full insert sequence	NA	coding protein	psRNATarget
CT831268.1	ncRNA:24   UGAAAUUAAUUUCAGUUUGACAAA   1   |=|**||||*||||||||=||||| targets:975   AUUAGAAUUCAAGUCAAAUUGUUU   998 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104M01, full insert sequence	NA	coding protein	psRNATarget