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BaseInfo

ncRNA ID novel_osa_miR3525
Species Oryza sativa
Class miRNA
Genome position Chr10:20068830-20068943 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 23
Mature sequence(if miRNA) 92 - UGAAAAUGCUAGAAUGACUUACA - 114
Stem-loop(if miRNA) --                  C C                    A       GU GAU
  UAAGUCAUUCUAGCAUUU C ACAUUCAUAUUGAUGUUAAU AAUCUAG  A   A
  |||||||||||||||||| | |||||||||||||||||||| |||||||  |
  AUUCAGUAAGAUCGUAAA G UGUAAGUAUAACUACAAUUA UUAGAUC  U   U
AC                  A U                    C       UG AUA
Stem-loop sequence UAAGUCAUUCUAGCAUUUCCCACAUUCAUAUUGAUGUUAAUAAAUCUAGGUAGAUAUAUAUGUCUAGAUUCAUUAACAUCAAUAUGAAUGUUGAAAAUGCUAGAAUGACUUACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288871.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:4279   UGUAAGUCAUUCUAGCAUUUUCC   4301

1.0 Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:4713   UGUAAGUCAUUCUAGCAUUUUCC   4735

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK121342.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:4547   UGUAAGUCAUUCUAGCAUUUUCC   4569

1.0 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
AK120281.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:1045   UGUAAGUCAUUCUAGCAUUUUCC   1067

1.0 Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence NA coding protein psRNATarget
AK072906.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:2717   UGUAAGUCAUUCUAGCAUUUUCU   2739

1.0 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence NA coding protein psRNATarget
XM_015778179.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:1624   UGUAAGUCAUUCUAGCAUUUUCC   1646

1.0 PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA methylthioribose kinase 2(LOC107276080) coding protein psRNATarget
XM_015764394.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:1296   UGUAAGUCAUUCUAGCAUUUUCC   1318

1.0 PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA vesicle-associated membrane protein 721(LOC4352920) coding protein psRNATarget
AK110888.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||||*
targets:1197   UGUAAGUCAUUCUAGCAUUUUCU   1219

1.0 Oryza sativa Japonica Group cDNA clone:002-172-H04, full insert sequence NA coding protein psRNATarget
AK288988.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAA-GU   1
  |||||||||||||||||||||-||
targets:923   UGUAAGUCAUUCUAGCAUUUUUCA   946

3.0 Oryza sativa Japonica Group cDNA, clone: J090086L17, full insert sequence NA coding protein psRNATarget
XM_015764779.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:4393   UGUAAGUCAUUCUAGCAUUUCUCA   4416

3.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015759908.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAA-GU   1
  |||||||||||||||||||||-||
targets:917   UGUAAGUCAUUCUAGCAUUUUUCA   940

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350124), mRNA disease resistance protein RPM1(LOC4350124) coding protein psRNATarget
XM_015764777.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:3559   UGUAAGUCAUUCUAGCAUUUCUCA   3582

3.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK288390.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:675   UGUAAGUCAUUCUAGCAUUUCUCA   698

3.0 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
AK288390.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*||
targets:636   UGUAAGUCAUUCUAGCAUUUCCA   658

1.5 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
XM_015764776.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:3323   UGUAAGUCAUUCUAGCAUUUCUCA   3346

3.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764778.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:3318   UGUAAGUCAUUCUAGCAUUUCUCA   3341

3.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015756141.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:2425   UGUAAGUCAUUCUAGCAUUUCUCA   2448

3.0 PREDICTED: Oryza sativa Japonica Group dynamin-related protein 1E (LOC4347929), transcript variant X1, mRNA dynamin-related protein 1E(LOC4347929) coding protein psRNATarget
XM_015756142.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:2328   UGUAAGUCAUUCUAGCAUUUCUCA   2351

3.0 PREDICTED: Oryza sativa Japonica Group dynamin-related protein 1E (LOC4347929), transcript variant X2, mRNA dynamin-related protein 1E(LOC4347929) coding protein psRNATarget
AK120148.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:459   UGUAAGUCAUUCUAGCAUUUCUCA   482

3.0 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
XM_015769984.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:1532   UGUAAGUCAUUCUAGCAUUUCUCA   1555

3.0 PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X2, mRNA glutathionyl-hydroquinone reductase YqjG(LOC4329160) coding protein psRNATarget
XM_015769983.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:1373   UGUAAGUCAUUCUAGCAUUUCUCA   1396

3.0 PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X1, mRNA glutathionyl-hydroquinone reductase YqjG(LOC4329160) coding protein psRNATarget
XM_015769985.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:1271   UGUAAGUCAUUCUAGCAUUUCUCA   1294

3.0 PREDICTED: Oryza sativa Japonica Group glutathionyl-hydroquinone reductase YqjG (LOC4329160), transcript variant X3, mRNA glutathionyl-hydroquinone reductase YqjG(LOC4329160) coding protein psRNATarget
AK070352.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAA-GU   1
  |||||||||||||||||||||-||
targets:414   UGUAAGUCAUUCUAGCAUUUUUCA   437

3.0 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
CT831392.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAA-GU   1
  |||||||||||||||||||||-||
targets:408   UGUAAGUCAUUCUAGCAUUUUUCA   431

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence NA coding protein psRNATarget
AK105036.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  ||||||||||||||||||||-|||
targets:275   UGUAAGUCAUUCUAGCAUUUCUCA   298

3.0 Oryza sativa Japonica Group cDNA clone:001-032-B07, full insert sequence NA coding protein psRNATarget
XM_015778291.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||=||||||||||*
targets:67   UGUAAGUCAUUUUAGCAUUUUCC   89

2.5 PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA protein LURP-one-related 6(LOC4335964) coding protein psRNATarget
AK289039.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||=||||||||||*
targets:73   UGUAAGUCAUUUUAGCAUUUUCC   95

2.5 Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence NA coding protein psRNATarget
XM_015767363.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||=||||||||||||||*
targets:1717   UGUAAGUUAUUCUAGCAUUUUCC   1739

2.0 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
AK102210.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||=||||||||||||||*
targets:1621   UGUAAGUUAUUCUAGCAUUUUCC   1643

2.0 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
AK060498.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||=||||||||||||||*
targets:1256   UGUAAGUUAUUCUAGCAUUUUCC   1278

2.0 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
XM_015763560.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||||||||||||=*
targets:980   UGUAAGUCAUUCUAGCAUUUUUU   1002

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA uncharacterized LOC107278415(LOC107278415) coding protein psRNATarget
CT833662.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||=||||||||||*
targets:1028   UGUAAGUCAUUUUAGCAUUUUCC   1050

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||=||||||||||*
targets:922   UGUAAGUCAUUUUAGCAUUUUCC   944

2.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
XM_015764295.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||=||||||||||||||*
targets:723   UGUAAGUUAUUCUAGCAUUUUCC   745

2.0 PREDICTED: Oryza sativa Japonica Group 54S ribosomal protein L37, mitochondrial (LOC4351876), mRNA 54S ribosomal protein L37, mitochondrial(LOC4351876) coding protein psRNATarget
XM_015768952.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*||
targets:4548   UGUAAGUCAUUCUAGCAUUUCCA   4570

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269313 (LOC9269313), mRNA uncharacterized LOC9269313(LOC9269313) coding protein psRNATarget
XM_015756761.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||||||||||*
targets:3347   UAUAAGUCAUUCUAGCAUUUUCC   3369

1.0 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
AK318560.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||*||||||||||*
targets:1119   UGUAAGUCAUUAUAGCAUUUUCC   1141

2.5 Oryza sativa Japonica Group cDNA, clone: J075170N13, full insert sequence NA coding protein psRNATarget
AK102955.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*|*
targets:765   UGUAAGUCAUUCUAGCAUUUCCC   787

2.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
AK120060.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*|*
targets:2068   UGUAAGUCAUUCUAGCAUUUCCC   2090

2.5 Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence NA coding protein psRNATarget
XM_015777143.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||*|||||||*
targets:1901   UGUAAGUCAUUCUAUCAUUUUCU   1923

2.5 PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA lecithin-cholesterol acyltransferase-like 1(LOC4333995) coding protein psRNATarget
XM_015793141.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*|*
targets:1916   UGUAAGUCAUUCUAGCAUUUCCC   1938

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA uncharacterized LOC4344622(LOC4344622) coding protein psRNATarget
XM_015773673.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||||||||||*
targets:1763   UAUAAGUCAUUCUAGCAUUUUCC   1785

1.0 PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA cytochrome P450 78A5(LOC4333404) coding protein psRNATarget
AK071679.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||*|||||||*
targets:1785   UGUAAGUCAUUCUAUCAUUUUCU   1807

2.5 Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence NA coding protein psRNATarget
XM_015785393.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |||||||||||*||||||||||*
targets:1557   UGUAAGUCAUUAUAGCAUUUUCC   1579

2.5 PREDICTED: Oryza sativa Japonica Group phosphoglycerate mutase-like protein AT74H (LOC4339877), mRNA phosphoglycerate mutase-like protein AT74H(LOC4339877) coding protein psRNATarget
CT831709.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*|*
targets:1138   UGUAAGUCAUUCUAGCAUUUCCC   1160

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128P05, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||||||||||||||||||||*|*
targets:980   UGUAAGUCAUUCUAGCAUUUCCC   1002

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
AK288502.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  |*||||||||||||||||||-|||
targets:560   UAUAAGUCAUUCUAGCAUUUCUCA   583

3.0 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  |*||||||||||||||||||-|||
targets:824   UUUAAGUCAUUCUAGCAUUUCUCA   847

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  |*||||||||||||||||||-|||
targets:561   UAUAAGUCAUUCUAGCAUUUCUCA   584

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
AK107938.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAA-AGU   1
  |*||||||||||||||||||-|||
targets:531   UAUAAGUCAUUCUAGCAUUUCUCA   554

3.0 Oryza sativa Japonica Group cDNA clone:002-135-A10, full insert sequence NA coding protein psRNATarget
XM_015777391.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||*||||||||=||||||||||*
targets:1281   UGGAAGUCAUUUUAGCAUUUUCC   1303

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA uncharacterized LOC4333864(LOC4333864) coding protein psRNATarget
XM_015778842.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*|||||||||||||||||||=*
targets:1117   UAUAAGUCAUUCUAGCAUUUUUC   1139

2.5 PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA putative RING-H2 finger protein ATL50(LOC4336763) coding protein psRNATarget
CT832810.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||*||||||||=||||||||||*
targets:1028   UGGAAGUCAUUUUAGCAUUUUCC   1050

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence NA coding protein psRNATarget
AK066216.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  ||*||||||||=||||||||||*
targets:1031   UGGAAGUCAUUUUAGCAUUUUCC   1053

2.5 Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*|||||||||||||=||||||*
targets:522   UAUAAGUCAUUCUAGUAUUUUCC   544

2.5 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
AK242586.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*|||||||||||||=||||||*
targets:511   UAUAAGUCAUUCUAGUAUUUUCC   533

2.5 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
XM_015789221.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||||||||*|*
targets:4852   UAUAAGUCAUUCUAGCAUUUCCC   4874

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4343406), mRNA disease resistance protein RGA2(LOC4343406) coding protein psRNATarget
AK070890.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||*|||||||*
targets:904   UAUAAGUCAUUCUAACAUUUUCC   926

2.5 Oryza sativa Japonica Group cDNA clone:J023069D18, full insert sequence NA coding protein psRNATarget
AK106593.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||||||||*|*
targets:1856   UAUAAGUCAUUCUAGCAUUUCCC   1878

2.5 Oryza sativa Japonica Group cDNA clone:002-111-H05, full insert sequence NA coding protein psRNATarget
XM_015775040.1
ncRNA:23   ACAUUCAGUAAGAUCGUAAAAGU   1
  |*||||||||||||*|||||||*
targets:1203   UAUAAGUCAUUCUAACAUUUUCU   1225

2.5 PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA senescence-specific cysteine protease SAG39-like(LOC107280424) coding protein psRNATarget