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BaseInfo

ncRNA ID novel_osa_miR3523
Species Oryza sativa
Class miRNA
Genome position Chr12:20760754-20760861 [-]
Reference genome IRGSP-1.0
Source SRR2040391
Length 21
Mature sequence(if miRNA) 1 - UCACAGAUGACUAGUUACCUG - 21
Stem-loop(if miRNA) --            C             -AAAAU      C   AU     AG U
  GGUGACUAGUCA CUGUGAUGGGUUG      GAAACC GUC  AGGUG  G U
  |||||||||||| |||||||||||||      |||||| |||  |||||  |
  CCAUUGAUCAGU GACACUGCCCGGC      CUUUGG CAG  UCCAC  C U
GU            A             CUUCAC      -   CU     CA A
Stem-loop sequence GGUGACUAGUCACCUGUGAUGGGUUGAAAAUGAAACCCGUCAUAGGUGAGGUUUACACCACCUUCGACGGUUUCCACUUCCGGCCCGUCACAGAUGACUAGUUACCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288547.1
ncRNA:21   GUCCAUUGAUCAGUAGACACU   1
  *||||*|*|||||||||||||
targets:113   AAGGUUAGUAGUCAUCUGUGA   133

2.0 Oryza sativa Japonica Group cDNA, clone: J090046I18, full insert sequence NA coding protein psRNATarget