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BaseInfo

ncRNA ID	novel_osa_miR3522
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8546267-8546357 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556011;SRR1556020
Length	25
Mature sequence(if miRNA)	1 - GGCGGAUCGGCCGGCGGCGGCGGCG - 25
Stem-loop(if miRNA)	--    -     AC    C      U  G  U  ACC   -A  A  A   CCGC GCCGC  GCCG UCCGCC CC CG GC   UGA  CG CG C   |||| |||||  |||| |||||| || || ||   |||  || ||   GGCG CGGCG  CGGC AGGCGG GG GC CG   ACU  GC GC G GC    G     GC    U      C  -  -  -CU   AC  A  A
Stem-loop sequence	CCGCGCCGCACGCCGCUCCGCCUCCGCGUGCACCUGAACGACGACGACGACGCAUCAUCGCCGGGCGGCGGAUCGGCCGGCGGCGGCGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242162.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   ||||||||||||||||||||||||| targets:714   CGCCGCCGCCGCCGGCCGAUCCGCC   738 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J075156E23, full insert sequence	NA	coding protein	psRNATarget
CT835556.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   =|||||||||*||||||||||=||| targets:1810   UGCCGCCGCCACCGGCCGAUCUGCC   1834 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210B21, full insert sequence	NA	coding protein	psRNATarget
CT835557.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   =|||||||||*||||||||||=||| targets:1812   UGCCGCCGCCACCGGCCGAUCUGCC   1836 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI217I20, full insert sequence	NA	coding protein	psRNATarget
XM_015763373.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   =|||||||||*||||||||||=||| targets:1836   UGCCGCCGCCACCGGCCGAUCUGCC   1860 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group laccase-25-like (LOC4351911), mRNA	laccase-25-like(LOC4351911)	coding protein	psRNATarget
XM_015769564.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   ||||||||||*||||||||||=||| targets:740   CGCCGCCGCCUCCGGCCGAUCUGCC   764 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL74 (LOC4330141), mRNA	RING-H2 finger protein ATL74(LOC4330141)	coding protein	psRNATarget
AK111136.1	ncRNA:25   GCGGCGGCGGCGGCCGGCUAGGCGG   1   ||||||||||*||||||||||=||| targets:746   CGCCGCCGCCUCCGGCCGAUCUGCC   770 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-176-D08, full insert sequence	NA	coding protein	psRNATarget