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BaseInfo

ncRNA ID	novel_osa_miR3521
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:18635913-18636020 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	19
Mature sequence(if miRNA)	1 - UUAGAUUUGGCAAUUAACU - 19
Stem-loop(if miRNA)	--      U                G ------    C   C   A        GGG   UUAGAU UGGCAAUUAACUAUUU C      ACCC UAU UCA UGACAUGU   U   |||||| |||||||||||||||| |      |||| ||| ||| ||||||||   AAUCUA ACCGUUAAUUGAUAAA G      UGGG GUA AGU ACUGUGUA   C AA      C                G AUUACC    U   C   A        AAC
Stem-loop sequence	UUAGAUUUGGCAAUUAACUAUUUGCACCCCUAUCUCAAUGACAUGUGGGUCCAAAUGUGUCAAUGACAUGUGGGUCCAUUAGGAAAUAGUUAAUUGCCACAUCUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761425.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   ||||||||||||*|||||| targets:805   AGUUAAUUGCCACAUCUAA   823 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4349563), transcript variant X2, mRNA	macrophage migration inhibitory factor homolog(LOC4349563)	coding protein	psRNATarget
XM_015761423.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   ||||||||||||*|||||| targets:865   AGUUAAUUGCCACAUCUAA   883 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4349563), transcript variant X1, mRNA	macrophage migration inhibitory factor homolog(LOC4349563)	coding protein	psRNATarget
AK121033.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   ||||||||||||*|||||| targets:942   AGUUAAUUGCCACAUCUAA   960 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023050K24, full insert sequence	NA	coding protein	psRNATarget
AK069218.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   |||||*||||||||||||| targets:2538   AGUUAUUUGCCAAAUCUAA   2556 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023010O06, full insert sequence	NA	coding protein	psRNATarget
XM_015775681.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   ||||=|||||||||||*|| targets:4882   AGUUGAUUGCCAAAUCGAA   4900 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group SCAR-like protein 1 (LOC4334569), mRNA	SCAR-like protein 1(LOC4334569)	coding protein	psRNATarget
AK110488.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   *|||=|||||||||||||* targets:2938   CGUUGAUUGCCAAAUCUAC   2956 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-167-B07, full insert sequence	NA	coding protein	psRNATarget
XM_015770325.1	ncRNA:19   UCAAUUAACGGUUUAGAUU   1   ||**|=||||||||||||| targets:2434   AGAAAGUUGCCAAAUCUAA   2452 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group formin-like protein 20 (LOC4330015), mRNA	formin-like protein 20(LOC4330015)	coding protein	psRNATarget