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BaseInfo

ncRNA ID novel_osa_miR3518
Species Oryza sativa
Class miRNA
Genome position Chr9:20053106-20053275 [+]
Reference genome IRGSP-1.0
Source SRR2040390
Length 21
Mature sequence(if miRNA) 1 - UUUUUUAAACAUGUUUGACCU - 21
Stem-loop(if miRNA) --       -AA           U                 A   ----     AUUAUU      UUU    U   -UU   U    A
  UUUUUUA   CAUGUUUGACC UUUGUCUUAUUCAAAAA UUU    AAGUA      AAUUAU   CCUA CAU   GAU UAUU U
  |||||||   ||||||||||| ||||||||||||||||| |||    |||||      ||||||   |||| |||   ||| ||||
  AAAAAAU   GUACAAACUGG AAGCAGAAUAAGUUUUU AAA    UUUAU      UUAAUA   GGAU GUA   UUA AUAA U
CU       CGC           C                 G   ACAC     -ACAUU      UAC    -   UUU   U    A
Stem-loop sequence UUUUUUAAACAUGUUUGACCUUUUGUCUUAUUCAAAAAAUUUAAGUAAUUAUUAAUUAUUUUCCUAUCAUUUGAUUUAUUAUUAAAUAUAUUUUUAUGUAGGCAUAUAAUUUUACAUAUUUCACAAAAGUUUUUGAAUAAGACGAACGGUCAAACAUGCGCUAAAAAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK240887.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:664   UGGUCAAACAUGUUUAAAAAA   684

0.0 Oryza sativa Japonica Group cDNA, clone: J065029G04, full insert sequence NA coding protein psRNATarget
XM_015764161.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:673   UGGUCAAACAUGUUUAAAAAA   693

0.0 PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4351273), transcript variant X2, mRNA macrophage migration inhibitory factor homolog(LOC4351273) coding protein psRNATarget
AK063389.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:394   UGGUCAAACAUGUUUAAAAAA   414

0.0 Oryza sativa Japonica Group cDNA clone:001-114-G12, full insert sequence NA coding protein psRNATarget
XM_015792994.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:2004   CGGUCAAACAUGUUUAAAAAA   2024

0.0 PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA putative serine/threonine-protein kinase-like protein CCR3(LOC4345414) coding protein psRNATarget
AK288960.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:381   CGGUCAAACAUGUUUAAAAAA   401

0.0 Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence NA coding protein psRNATarget
AK288290.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:2831   UGGUCAAACAUGUUUAAAAAA   2851

0.0 Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence NA coding protein psRNATarget
AK243524.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:3117   CGGUCAAACAUGUUUAAAAAA   3137

0.0 Oryza sativa Japonica Group cDNA, clone: J100075M04, full insert sequence NA coding protein psRNATarget
XM_015792944.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:20   UGGUCAAACAUGUUUAAAAAA   40

0.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 5 (LOC4345956), mRNA wall-associated receptor kinase 5(LOC4345956) coding protein psRNATarget
AK111819.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:3697   CGGUCAAACAUGUUUAAAAAA   3717

0.0 Oryza sativa Japonica Group cDNA clone:J023009A16, full insert sequence NA coding protein psRNATarget
AK288428.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:903   CGGUCAAACAUGUUUAAAAAA   923

0.0 Oryza sativa Japonica Group cDNA, clone: J090032O10, full insert sequence NA coding protein psRNATarget
AK289010.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||||||||||||
targets:1549   CGGUCAAACAUGUUUAAAAAA   1569

0.0 Oryza sativa Japonica Group cDNA, clone: J090089F21, full insert sequence NA coding protein psRNATarget
XM_015783460.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||=|||||||||||
targets:886   UGGUCAAACGUGUUUAAAAAA   906

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278662 (LOC107278662), mRNA uncharacterized LOC107278662(LOC107278662) coding protein psRNATarget
AK108096.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||||||=||||||||||||
targets:750   UGGUCAAAUAUGUUUAAAAAA   770

1.5 Oryza sativa Japonica Group cDNA clone:002-139-A08, full insert sequence NA coding protein psRNATarget
AK108096.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **||=||||||*|||||||||
targets:1029   CAGUUAAACAUAUUUAAAAAA   1049

2.5 Oryza sativa Japonica Group cDNA clone:002-139-A08, full insert sequence NA coding protein psRNATarget
XM_015787231.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||||||=||||||||||||
targets:754   UGGUCAAAUAUGUUUAAAAAA   774

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339918 (LOC4339918), mRNA uncharacterized LOC4339918(LOC4339918) coding protein psRNATarget
XM_015787231.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **||=||||||*|||||||||
targets:1035   CAGUUAAACAUAUUUAAAAAA   1055

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339918 (LOC4339918), mRNA uncharacterized LOC4339918(LOC4339918) coding protein psRNATarget
AK288860.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||||||||||||||=||||
targets:3292   CGGUCAAACAUGUUUAGAAAA   3312

1.5 Oryza sativa Japonica Group cDNA, clone: J090077C13, full insert sequence NA coding protein psRNATarget
XM_015764314.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||=||||||||||||||||
targets:214   CGGUUAAACAUGUUUAAAAAA   234

1.0 PREDICTED: Oryza sativa Japonica Group putative L-type lectin-domain containing receptor kinase I.4 (LOC4326097), mRNA putative L-type lectin-domain containing receptor kinase I.4(LOC4326097) coding protein psRNATarget
AK242125.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||=|||=||||||||||||
targets:2001   UGGUUAAAUAUGUUUAAAAAA   2021

2.5 Oryza sativa Japonica Group cDNA, clone: J075148C03, full insert sequence NA coding protein psRNATarget
BT131706.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  =||*|||||||||||||||||
targets:1   GGGGCAAACAUGUUUAAAAAA   21

1.0 Oryza sativa clone RRlibD00056 mRNA sequence NA coding protein psRNATarget
AK288523.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||*|||||||||
targets:47   CGGUCAAACAUAUUUAAAAAA   67

1.5 Oryza sativa Japonica Group cDNA, clone: J090044C01, full insert sequence NA coding protein psRNATarget
AK065369.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||*|||||||||
targets:1572   CGGUCAAACAUUUUUAAAAAA   1592

1.5 Oryza sativa Japonica Group cDNA clone:J013023A04, full insert sequence NA coding protein psRNATarget
AK242848.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||*|||||||||
targets:3201   CGGUCAAACAUAUUUAAAAAA   3221

1.5 Oryza sativa Japonica Group cDNA, clone: J090072L17, full insert sequence NA coding protein psRNATarget
AK288628.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|*||||||||||||||||||
targets:2431   UGAUCAAACAUGUUUAAAAAA   2451

1.0 Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence NA coding protein psRNATarget
AK289044.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *||||||||||*|||||||||
targets:1478   CGGUCAAACAUAUUUAAAAAA   1498

1.5 Oryza sativa Japonica Group cDNA, clone: J090092F18, full insert sequence NA coding protein psRNATarget
AK288459.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||||=||||*|||||||||
targets:644   CGGUCAGACAUAUUUAAAAAA   664

2.5 Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence NA coding protein psRNATarget
AK288575.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|||=||||||*|||||||||
targets:3703   CGGUUAAACAUAUUUAAAAAA   3723

2.5 Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence NA coding protein psRNATarget
AK064810.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  |*|||||||||||||*|||||
targets:2086   AAGUCAAACAUGUUUCAAAAA   2106

1.5 Oryza sativa Japonica Group cDNA clone:J013000D21, full insert sequence NA coding protein psRNATarget
XM_015767565.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  |*|||||||||||||*|||||
targets:2086   AAGUCAAACAUGUUUCAAAAA   2106

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein P16F5.06 (LOC4328244), mRNA uncharacterized RNA-binding protein P16F5.06(LOC4328244) coding protein psRNATarget
AK288724.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **||*||||||||||||||||
targets:218   UAGUAAAACAUGUUUAAAAAA   238

1.0 Oryza sativa Japonica Group cDNA, clone: J090063A16, full insert sequence NA coding protein psRNATarget
XM_015790985.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **||*||||||||||||||||
targets:212   UAGUAAAACAUGUUUAAAAAA   232

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278583 (LOC107278583), mRNA uncharacterized LOC107278583(LOC107278583) coding protein psRNATarget
AK066612.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **|||*|=|||||||||||||
targets:954   CUGUCUAGCAUGUUUAAAAAA   974

2.0 Oryza sativa Japonica Group cDNA clone:J013071D21, full insert sequence NA coding protein psRNATarget
XM_015789291.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **|||*|=|||||||||||||
targets:988   CUGUCUAGCAUGUUUAAAAAA   1008

2.0 PREDICTED: Oryza sativa Japonica Group DNA-binding protein RHL1 (LOC4342516), transcript variant X1, mRNA DNA-binding protein RHL1(LOC4342516) coding protein psRNATarget
XM_015789292.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **|||*|=|||||||||||||
targets:991   CUGUCUAGCAUGUUUAAAAAA   1011

2.0 PREDICTED: Oryza sativa Japonica Group DNA-binding protein RHL1 (LOC4342516), transcript variant X2, mRNA DNA-binding protein RHL1(LOC4342516) coding protein psRNATarget
XM_015785898.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **|||*|=|||||||||||||
targets:1031   CUGUCUAGCAUGUUUAAAAAA   1051

2.0 PREDICTED: Oryza sativa Japonica Group DNA-binding protein RHL1 (LOC9272197), mRNA DNA-binding protein RHL1(LOC9272197) coding protein psRNATarget
AK103352.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  **|||*|=|||||||||||||
targets:950   CUGUCUAGCAUGUUUAAAAAA   970

2.0 Oryza sativa Japonica Group cDNA clone:J033126I17, full insert sequence NA coding protein psRNATarget
AK288408.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  *|*|*||||||||||||||||
targets:2985   CGAUGAAACAUGUUUAAAAAA   3005

2.0 Oryza sativa Japonica Group cDNA, clone: J090030J08, full insert sequence NA coding protein psRNATarget
XM_015757482.1
ncRNA:21   UCCAGUUUGUACAAAUUUUUU   1
  ***||||||||*|||||||||
targets:1589   UUUUCAAACAUAUUUAAAAAA   1609

2.5 PREDICTED: Oryza sativa Japonica Group agmatine coumaroyltransferase-1 (LOC4348504), mRNA agmatine coumaroyltransferase-1(LOC4348504) coding protein psRNATarget
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