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BaseInfo

ncRNA ID novel_osa_miR3517
Species Oryza sativa
Class miRNA
Genome position Chr11:24615149-24615314 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - UACAUUGUAAAACAGAGGAAGUAC - 24
Stem-loop(if miRNA) --   C    C    C     A   U                           UGAUAUUCAUAU          A     A  CAUAU
  ACU CCUC GUUU ACAAU UAA UCAUUCUAGCAUUUUUCAUAUUCAUAU            UGAUGUUGAU AAUCU GA     A
  ||| |||| |||| ||||| ||| |||||||||||||||||||||||||||            |||||||||| ||||| ||
  UGA GGAG CAAA UGUUA AUU AGUAAGAUCGUAAAAGGUGUAAGUAUA            ACUACAAUUA UUAGA CU     U
CA   A    A    A     C   C                           ------------          C     C  AUCUA
Stem-loop sequence ACUCCCUCCGUUUCACAAUAUAAUUCAUUCUAGCAUUUUUCAUAUUCAUAUUGAUAUUCAUAUUGAUGUUGAUAAAUCUAGACAUAUAUAUCUAUCCAGAUUCAUUAACAUCAAUAUGAAUGUGGAAAAUGCUAGAAUGACUUACAUUGUAAAACAGAGGAAGUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288266.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||||||||||||||||
targets:1516   GUACUUCCUCUGUUUUACAAUGUA   1539

0.0 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
AK064965.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  |||||||||||||||*||||||||
targets:1608   GUACUUCCUCUGUUUCACAAUGUA   1631

1.5 Oryza sativa Japonica Group cDNA clone:J013001B01, full insert sequence NA coding protein psRNATarget
AK242153.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  |||||||||||||||*||||||||
targets:1009   GUACUUCCUCUGUUUCACAAUGUA   1032

1.5 Oryza sativa Japonica Group cDNA, clone: J075153O10, full insert sequence NA coding protein psRNATarget
XM_015795314.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*|||||||||||||
targets:1717   UUACUUCCUCCGUUUUACAAUGUA   1740

1.0 PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4344671), mRNA cytochrome P450 89A2(LOC4344671) coding protein psRNATarget
XM_015763601.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*|||||||||||||
targets:1760   CUACUUCCUCCGUUUUACAAUGUA   1783

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270455 (LOC9270455), transcript variant X6, mRNA uncharacterized LOC9270455(LOC9270455) coding protein psRNATarget
XM_015764295.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||||||||||||*||||||||
targets:703   UUACUUCCUCUGUUUCACAAUGUA   726

1.5 PREDICTED: Oryza sativa Japonica Group 54S ribosomal protein L37, mitochondrial (LOC4351876), mRNA 54S ribosomal protein L37, mitochondrial(LOC4351876) coding protein psRNATarget
AK065951.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||=||||||||*||||||||
targets:2708   AUACUUUCUCUGUUUCACAAUGUA   2731

2.5 Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence NA coding protein psRNATarget
AK100032.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||=||||||
targets:2627   AUACUUCCUCCGUUUUAUAAUGUA   2650

2.5 Oryza sativa Japonica Group cDNA clone:J013148H21, full insert sequence NA coding protein psRNATarget
AK072611.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||=||||||
targets:1813   CUACUUCCUCCGUUUUAUAAUGUA   1836

2.5 Oryza sativa Japonica Group cDNA clone:J023133A01, full insert sequence NA coding protein psRNATarget
XM_015786576.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||=||||||
targets:1807   CUACUUCCUCCGUUUUAUAAUGUA   1830

2.5 PREDICTED: Oryza sativa Japonica Group cannabidiolic acid synthase-like 2 (LOC4341257), mRNA cannabidiolic acid synthase-like 2(LOC4341257) coding protein psRNATarget
AK064623.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||=||||||
targets:1639   UUACUUCCUCCGUUUUAUAAUGUA   1662

2.5 Oryza sativa Japonica Group cDNA clone:002-113-E04, full insert sequence NA coding protein psRNATarget
XM_015791767.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||=||||||
targets:1633   UUACUUCCUCCGUUUUAUAAUGUA   1656

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g02370, mitochondrial (LOC4325784), mRNA pentatricopeptide repeat-containing protein At1g02370, mitochondrial(LOC4325784) coding protein psRNATarget
XM_015789040.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:4693   GUACUUCCUCCGUUUCACAAUGUA   4716

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK240780.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||=||||||||*||||||||
targets:903   AUACUUUCUCUGUUUCACAAUGUA   926

2.5 Oryza sativa Japonica Group cDNA, clone: J053075H13, full insert sequence NA coding protein psRNATarget
AK121342.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:4527   GUACUUCCUCCGUUUCACAAUGUA   4550

2.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015770158.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:4084   GUACUUCCUCCGUUUAACAAUGUA   4107

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015770157.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:4084   GUACUUCCUCCGUUUAACAAUGUA   4107

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015774902.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1986   GUACUUCCUCCGUUUCACAAUGUA   2009

2.5 PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4333557), mRNA beclin-1-like protein(LOC4333557) coding protein psRNATarget
AK066359.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1927   GUACUUCCUCCGUUUCACAAUGUA   1950

2.5 Oryza sativa Japonica Group cDNA clone:J013066O06, full insert sequence NA coding protein psRNATarget
AK099664.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1927   GUACUUCCUCCGUUUCACAAUGUA   1950

2.5 Oryza sativa Japonica Group cDNA clone:J013066P07, full insert sequence NA coding protein psRNATarget
XM_015759228.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:2063   GUACUUCCUCCGUUUCACAAUGUA   2086

2.5 PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA MLO-like protein 9(LOC4349258) coding protein psRNATarget
AK072272.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1803   GUACUUCCUCCGUUUCACAAUGUA   1826

2.5 Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence NA coding protein psRNATarget
XM_015768203.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1514   GUACUUCCUCCGUUUCACAAUGUA   1537

2.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate syntase complex subunit NUS1 (LOC4328624), transcript variant X1, mRNA dehydrodolichyl diphosphate syntase complex subunit NUS1(LOC4328624) coding protein psRNATarget
XM_015768204.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1511   GUACUUCCUCCGUUUCACAAUGUA   1534

2.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate syntase complex subunit NUS1 (LOC4328624), transcript variant X2, mRNA dehydrodolichyl diphosphate syntase complex subunit NUS1(LOC4328624) coding protein psRNATarget
AK070836.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1465   GUACUUCCUCCGUUUCACAAUGUA   1488

2.5 Oryza sativa Japonica Group cDNA clone:J023071O06, full insert sequence NA coding protein psRNATarget
XM_015792390.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1458   GUACUUCCUCCGUUUCACAAUGUA   1481

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342294 (LOC4342294), transcript variant X1, mRNA uncharacterized LOC4342294(LOC4342294) coding protein psRNATarget
XM_015768205.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1207   GUACUUCCUCCGUUUCACAAUGUA   1230

2.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate syntase complex subunit NUS1 (LOC4328624), transcript variant X3, mRNA dehydrodolichyl diphosphate syntase complex subunit NUS1(LOC4328624) coding protein psRNATarget
XM_015768206.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1204   GUACUUCCUCCGUUUCACAAUGUA   1227

2.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate syntase complex subunit NUS1 (LOC4328624), transcript variant X4, mRNA dehydrodolichyl diphosphate syntase complex subunit NUS1(LOC4328624) coding protein psRNATarget
XM_015768207.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1120   GUACUUCCUCCGUUUCACAAUGUA   1143

2.5 PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate syntase complex subunit NUS1 (LOC4328624), transcript variant X5, mRNA dehydrodolichyl diphosphate syntase complex subunit NUS1(LOC4328624) coding protein psRNATarget
CT837593.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:68   GUACUUCCUCCGUUUCACAAUGUA   91

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence NA coding protein psRNATarget
AK061459.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1290   GUACUUCCUCCGUUUAACAAUGUA   1313

2.5 Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence NA coding protein psRNATarget
AK104480.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:1288   GUACUUCCUCCGUUUAACAAUGUA   1311

2.5 Oryza sativa Japonica Group cDNA clone:006-301-G04, full insert sequence NA coding protein psRNATarget
BT131317.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  ||||||||||*||||*||||||||
targets:478   GUACUUCCUCCGUUUCACAAUGUA   501

2.5 Oryza sativa clone RRlibB00677 mRNA sequence NA coding protein psRNATarget
AK288871.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:4259   AUACUUCCUCCGUUUCACAAUGUA   4282

2.5 Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence NA coding protein psRNATarget
AK288988.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:903   AUACUUCCUCCGUUUCACAAUGUA   926

2.5 Oryza sativa Japonica Group cDNA, clone: J090086L17, full insert sequence NA coding protein psRNATarget
AK288568.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:2757   AUACUUCCUCCGUUUCACAAUGUA   2780

2.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
XM_015764832.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1163   CUACUUCCUCCGUUUCACAAUGUA   1186

2.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC107276755), transcript variant X2, mRNA probable LRR receptor-like serine/threonine-protein kinase At3g47570(LOC107276755) coding protein psRNATarget
XM_015768952.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*||||*|||||||||||||
targets:583   AUACUCCCUCCGUUUUACAAUGUA   606

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269313 (LOC9269313), mRNA uncharacterized LOC9269313(LOC9269313) coding protein psRNATarget
AK120281.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*|||||||||*||||||||
targets:1025   CUACUCCCUCUGUUUCACAAUGUA   1048

2.5 Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence NA coding protein psRNATarget
AK067512.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:2242   AUACUUCCUCCGUUUCACAAUGUA   2265

2.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
XM_015759908.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:897   AUACUUCCUCCGUUUCACAAUGUA   920

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350124), mRNA disease resistance protein RPM1(LOC4350124) coding protein psRNATarget
XM_015761417.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:305   AUACUUCCUCCGUUUCACAAUGUA   328

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA uncharacterized LOC9270662(LOC9270662) coding protein psRNATarget
AK288872.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1751   UUACUUCCUCCGUUUCACAAUGUA   1774

2.5 Oryza sativa Japonica Group cDNA, clone: J090078I05, full insert sequence NA coding protein psRNATarget
XM_015785143.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1694   AUACUUCCUCCGUUUCACAAUGUA   1717

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA uncharacterized LOC9266451(LOC9266451) coding protein psRNATarget
AK242868.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1693   CUACUUCCUCCGUUUCACAAUGUA   1716

2.5 Oryza sativa Japonica Group cDNA, clone: J090076F12, full insert sequence NA coding protein psRNATarget
AK109758.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*|||||||||*||||||||
targets:1620   UUACUCCCUCUGUUUCACAAUGUA   1643

2.5 Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence NA coding protein psRNATarget
XM_015795349.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*|||||||||*||||||||
targets:2464   CUACUACCUCUGUUUCACAAUGUA   2487

2.5 PREDICTED: Oryza sativa Japonica Group protein HOTHEAD (LOC4345513), mRNA protein HOTHEAD(LOC4345513) coding protein psRNATarget
XM_015793141.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1896   AUACUUCCUCCGUUUCACAAUGUA   1919

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA uncharacterized LOC4344622(LOC4344622) coding protein psRNATarget
XM_015781241.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||||*||||||
targets:1896   UUACUUCCUCCGUUUUAAAAUGUA   1919

2.5 PREDICTED: Oryza sativa Japonica Group sucrose nonfermenting 4-like protein (LOC4335727), transcript variant X2, mRNA sucrose nonfermenting 4-like protein(LOC4335727) coding protein psRNATarget
XM_015763894.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1880   CUACUUCCUCCGUUUCACAAUGUA   1903

2.5 PREDICTED: Oryza sativa Japonica Group ureide permease 2 (LOC4352286), mRNA ureide permease 2(LOC4352286) coding protein psRNATarget
AK069916.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1866   CUACUUCCUCCGUUUCACAAUGUA   1889

2.5 Oryza sativa Japonica Group cDNA clone:J023038C16, full insert sequence NA coding protein psRNATarget
AK099655.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:671   UUACUUCCUCCGUUUCACAAUGUA   694

2.5 Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence NA coding protein psRNATarget
XM_015793585.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:1739   CUACUUCCUCCGUUUCACAAUGUA   1762

2.5 PREDICTED: Oryza sativa Japonica Group putative F-box/LRR-repeat protein 23 (LOC107276429), mRNA putative F-box/LRR-repeat protein 23(LOC107276429) coding protein psRNATarget
CT837739.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*||||*|||||||||||||
targets:1355   CUACUCCCUCCGUUUUACAAUGUA   1378

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048L02, full insert sequence NA coding protein psRNATarget
AK066283.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:924   CUACUUCCUCCGUUUCACAAUGUA   947

2.5 Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence NA coding protein psRNATarget
CT831392.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:388   UUACUUCCUCCGUUUCACAAUGUA   411

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence NA coding protein psRNATarget
AK240884.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *|||||||||*||||*||||||||
targets:385   CUACUUCCUCCGUUUCACAAUGUA   408

2.5 Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence NA coding protein psRNATarget
AK064502.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||||*||||*|||||||||||||
targets:479   AUACUCCCUCCGUUUUACAAUGUA   502

2.0 Oryza sativa Japonica Group cDNA clone:002-111-D06, full insert sequence NA coding protein psRNATarget
AK241705.1
ncRNA:24   CAUGAAGGAGACAAAAUGUUACAU   1
  *||=||||||*||||*||||||||
targets:3956   AUAUUUCCUCCGUUUCACAAUGUA   3979

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget