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BaseInfo

ncRNA ID	novel_osa_miR3516
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:21528692-21528777 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390;SRR2040410;SRR2040411
Length	24
Mature sequence(if miRNA)	63 - UUAAAUGGACCGCACGCGAAAAUG - 86
Stem-loop(if miRNA)	--                           C     G      C   UUUUUGCGUGCGGUCCAUUUAAGAGGA CGCAC AAAAAA C   ||||||||||||||||||||||||||| ||||| ||||||   AAAAGCGCACGCCAGGUAAAUUCUCCU GCGUG UUUUUU A GU                           A     G      A
Stem-loop sequence	UUUUUGCGUGCGGUCCAUUUAAGAGGACCGCACGAAAAAACCAAUUUUUUGGUGCGAUCCUCUUAAAUGGACCGCACGCGAAAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288261.1	ncRNA:24   GUAAAAGCGCACGCCAGGUAAAUU   1   *||*|||||*||||||||||*||| targets:3161   GAUCUUCGCAUGCGGUCCAUAUAA   3184 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence	NA	coding protein	psRNATarget
AK110674.1	ncRNA:24   GUAAAAGCGCACGCCAGGUAAAUU   1   *|||*||*|||||||||||*|||| targets:472   GAUUAUCCCGUGCGGUCCACUUAA   495 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-169-G07, full insert sequence	NA	coding protein	psRNATarget
HI404042.1	ncRNA:24   GUAAAAGCGCACGCCAGGUAAAUU   1   *|||*||*|||||||||||*|||| targets:7   GAUUAUCCCGUGCGGUCCACUUAA   30 Target Full Sequence	2.5	Sequence 2167 from Patent EP2074227	NA	coding protein	psRNATarget
JB164503.1	ncRNA:24   GUAAAAGCGCACGCCAGGUAAAUU   1   *|||*||*|||||||||||*|||| targets:7   GAUUAUCCCGUGCGGUCCACUUAA   30 Target Full Sequence	2.5	Sequence 2167 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236172.1	ncRNA:24   GUAAAAGCGCACGCCAGGUAAAUU   1   *|||*||*|||||||||||*|||| targets:7   GAUUAUCCCGUGCGGUCCACUUAA   30 Target Full Sequence	2.5	Sequence 2167 from Patent EP2985353	NA	coding protein	psRNATarget