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BaseInfo

ncRNA ID novel_osa_miR3515
Species Oryza sativa
Class miRNA
Genome position Chr8:26435795-26435878 [+]
Reference genome IRGSP-1.0
Source SRR2040390
Length 21
Mature sequence(if miRNA) 64 - AGAUUACUUAGACUCAAAAGA - 84
Stem-loop(if miRNA) --       C    U     CA G      C   A   CUAC
  UUUUGAG CUAA UAGUC  U AUUAGC ACA GUG    A
  ||||||| |||| |||||  | |||||| ||| |||    G
  AAAACUC GAUU AUUAG  A UAAUCG UGU CAC    U
AG       A    C     AC G      -   A   CCAA
Stem-loop sequence UUUUGAGCCUAAUUAGUCCAUGAUUAGCCACAAGUGCUACAGUAACCCACAUGUGCUAAUGACAGAUUACUUAGACUCAAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288820.1
ncRNA:21   AGAAAACUCAGAUUCAUUAGA   1
  |=||||||||||||*|||||*
targets:3030   UUUUUUGAGUCUAAUUAAUCC   3050

2.5 Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence NA coding protein psRNATarget