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BaseInfo

ncRNA ID	novel_osa_miR3514
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:23617668-23617775 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	24
Mature sequence(if miRNA)	85 - AAAAAGUCUUAUAACCUGAAACGG - 108
Stem-loop(if miRNA)	--      UA   C        C      CA        C   UAUAAC     UCA   GUUUCA  UUA AAGACUUU UAGCGU  UCCAUAUU AUA      UAGAU   U   ||||||  ||| |||||||| ||||||  |||||||| |||      |||||   CAAAGU  AAU UUCUGAAA AUCGUA  GGGUGUAA UAU      AUCUA   U GG      CC   A        A      AC        A   ------     CAA
Stem-loop sequence	GUUUCAUAUUACAAGACUUUCUAGCGUCAUCCAUAUUCAUAUAUAACUAGAUUCAUUAACAUCUAUAUAAAUGUGGGCAAUGCUAAAAAGUCUUAUAACCUGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835003.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||||||||*|||| targets:169   CCGUUUCAGGUUAUAAGACGUUUU   192 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
XM_015774872.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||||||||*|||| targets:591   CCGUUUCAGGUUAUAAGACGUUUU   614 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333037 (LOC4333037), transcript variant X2, mRNA	uncharacterized LOC4333037(LOC4333037)	coding protein	psRNATarget
XM_015777008.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1360   CCGUUUCAGGUUAUAAGACUUUCU   1383 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331744 (LOC4331744), mRNA	uncharacterized LOC4331744(LOC4331744)	coding protein	psRNATarget
AK073998.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1496   CCGUUUCAGGUUAUAAGACUUUCU   1519 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033071H21, full insert sequence	NA	coding protein	psRNATarget
CT834348.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1393   CCGUUUCAGGUUAUAAGACUUUCU   1416 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106J11, full insert sequence	NA	coding protein	psRNATarget
XM_015767411.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||*|||||||||| targets:2643   CCGUUUCAGGUUACAAGACUUUUU   2666 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g74900, mitochondrial (LOC4330315), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g74900, mitochondrial(LOC4330315)	coding protein	psRNATarget
XM_015767410.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||*|||||||||| targets:2698   CCGUUUCAGGUUACAAGACUUUUU   2721 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g74900, mitochondrial (LOC4330315), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g74900, mitochondrial(LOC4330315)	coding protein	psRNATarget
AK068435.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1562   CCGUUUCAGGUUAUAAGACUUUCU   1585 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013155N15, full insert sequence	NA	coding protein	psRNATarget
XM_015774404.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:3132   CCGUUUCAGGUUAUAAGACUUUCU   3155 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA	protein argonaute 11-like(LOC4333733)	coding protein	psRNATarget
AK120530.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1834   CCGUUUCAGGUUAUAAGACUUUCU   1857 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013127H10, full insert sequence	NA	coding protein	psRNATarget
AK288417.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||||||||*|||| targets:3056   CCGUUUCAGGUUAUAAGACGUUUU   3079 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence	NA	coding protein	psRNATarget
XM_015755177.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||||||||||||||||*| targets:1736   CCGUUUCAGGUUAUAAGACUUUCU   1759 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA	glutathione S-transferase T3(LOC4346703)	coding protein	psRNATarget
AK288994.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||||||||*|||| targets:1336   CCGUUUCAGGUUAUAAGACGUUUU   1359 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget
AK067363.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||*|||||||||||||| targets:949   CCGUUUCAGAUUAUAAGACUUUUU   972 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
AK288358.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||||||||||||||*|||| targets:869   CCGUUUCAGGUUAUAAGACGUUUU   892 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
XM_015755259.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||=||||||||||||*|||| targets:779   CCGUUUUAGGUUAUAAGACAUUUU   802 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
CT837804.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=*||||||||||||||||||||| targets:855   CUAUUUCAGGUUAUAAGACUUUUU   878 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence	NA	coding protein	psRNATarget
AK106793.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||=||||||||||||*|||| targets:174   CCGUUUUAGGUUAUAAGACGUUUU   197 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence	NA	coding protein	psRNATarget
AK243435.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||=|||||||||*||||||| targets:1689   CCGUUUUAGGUUAUAAAACUUUUU   1712 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100068A12, full insert sequence	NA	coding protein	psRNATarget
XM_015755175.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||=|||||||||*||||||| targets:1699   CCGUUUUAGGUUAUAAAACUUUUU   1722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 76M5-like (LOC4347207), mRNA	cytochrome P450 76M5-like(LOC4347207)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||||||||||||||||*| targets:730   CUGUUUCAGGUUAUAAGACUUUCU   753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||||||||||||||||*| targets:730   CUGUUUCAGGUUAUAAGACUUUCU   753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288527.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||||=|||||||||||*|||| targets:569   CCGUUUCGGGUUAUAAGACGUUUU   592 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
XM_015763806.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   *|||||||||||||||||*||||| targets:1030   ACGUUUCAGGUUAUAAGAAUUUUU   1053 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352519 (LOC4352519), mRNA	uncharacterized LOC4352519(LOC4352519)	coding protein	psRNATarget
AK069806.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ==|||||||||||||||||*|||| targets:1412   UUGUUUCAGGUUAUAAGACGUUUU   1435 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023030P11, full insert sequence	NA	coding protein	psRNATarget
AK060129.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||*||||||||||||||||*| targets:875   CCGUUCCAGGUUAUAAGACUUUCU   898 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-309-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015757964.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |||||*||||||||||||||||*| targets:918   CCGUUCCAGGUUAUAAGACUUUCU   941 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein YLS9 (LOC4349292), transcript variant X1, mRNA	protein YLS9(LOC4349292)	coding protein	psRNATarget
AK071625.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||*|||||||||||||*| targets:1290   CCGUUUCAUGUUAUAAGACUUUCU   1313 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence	NA	coding protein	psRNATarget
XM_015769449.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||**|||||||||||||| targets:68   CCGUUUCAUAUUAUAAGACUUUUU   91 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF018-like (LOC107278604), mRNA	ethylene-responsive transcription factor ERF018-like(LOC107278604)	coding protein	psRNATarget
AK241082.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||*|*||||||||||||| targets:1201   CCGUUUCACGAUAUAAGACUUUUU   1224 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065073H04, full insert sequence	NA	coding protein	psRNATarget
XM_015772638.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||||||||*|*||||||||||||| targets:1218   CCGUUUCACGAUAUAAGACUUUUU   1241 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 8 (LOC4332273), mRNA	probable carboxylesterase 8(LOC4332273)	coding protein	psRNATarget
AK287948.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=*|||||||||||||||||||*| targets:842   CUAUUUCAGGUUAUAAGACUUUCU   865 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075028D01, full insert sequence	NA	coding protein	psRNATarget
XM_015795948.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=*|||||||||||||||||||*| targets:992   CUAUUUCAGGUUAUAAGACUUUCU   1015 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 60S ribosomal protein L18a-like protein (LOC4326318), mRNA	60S ribosomal protein L18a-like protein(LOC4326318)	coding protein	psRNATarget
AK068259.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ||*|||=||||||||||||*|||| targets:1243   CCAUUUUAGGUUAUAAGACAUUUU   1266 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||||*||||||||*|||| targets:2818   CUGUUUCAGGCUAUAAGACGUUUU   2841 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
XM_015767218.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:3683   CUGUUUCAAGUUAUAAGACUUUCU   3706 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767215.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:3779   CUGUUUCAAGUUAUAAGACUUUCU   3802 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767217.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:3838   CUGUUUCAAGUUAUAAGACUUUCU   3861 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767212.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:3905   CUGUUUCAAGUUAUAAGACUUUCU   3928 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767214.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:3934   CUGUUUCAAGUUAUAAGACUUUCU   3957 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
XM_015767211.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||*|||||||||||||*| targets:4001   CUGUUUCAAGUUAUAAGACUUUCU   4024 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106)	coding protein	psRNATarget
AK061217.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ==||||||||*||||||||*|||| targets:1296   UUGUUUCAGGGUAUAAGACAUUUU   1319 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-210-E06, full insert sequence	NA	coding protein	psRNATarget
XM_015776978.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ==||||||||*||||||||*|||| targets:1474   UUGUUUCAGGGUAUAAGACAUUUU   1497 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4327921), mRNA	UPF0481 protein At3g47200(LOC4327921)	coding protein	psRNATarget
XM_015758786.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   *=||||||*||||||||||*|||| targets:650   GUGUUUCACGUUAUAAGACGUUUU   673 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA	uncharacterized LOC4348279(LOC4348279)	coding protein	psRNATarget
XM_015793424.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   ==*||||||||||||||||*|||* targets:1654   UUUUUUCAGGUUAUAAGACGUUUG   1677 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 85A2 (LOC4345521), mRNA	UDP-glycosyltransferase 85A2(LOC4345521)	coding protein	psRNATarget
AK071562.1	ncRNA:24   GGCAAAGUCCAAUAUUCUGAAAAA   1   |=||||||***||||||||||||| targets:1274   CUGUUUCACAAUAUAAGACUUUUU   1297 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023102P22, full insert sequence	NA	coding protein	psRNATarget