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BaseInfo

ncRNA ID novel_osa_miR3513
Species Oryza sativa
Class miRNA
Genome position Chr11:24946850-24946901 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR4407775;SRR1556020
Length 24
Mature sequence(if miRNA) 29 - AGAUAUUAAUGAAUCUAGGCACAC - 52
Stem-loop(if miRNA) --    A                CAC
  AGAU UUAAUGAAUCUAGGCA   A
  |||| ||||||||||||||||
  UCUA AAUUACUUAGAUCUGU   U
UA    C                AUA
Stem-loop sequence AGAUAUUAAUGAAUCUAGGCACACAUAUAUGUCUAGAUUCAUUAACAUCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120148.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||||||||||||||||*||||
targets:518   GUGUGCCUAGAUUCAUUAACAUCU   541

1.5 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
XM_015772707.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||||||||||||||||*||||
targets:1044   GUGUGCCUAGAUUCAUUAACAUCU   1067

1.5 PREDICTED: Oryza sativa Japonica Group protein ELF4-LIKE 3 (LOC4333090), mRNA protein ELF4-LIKE 3(LOC4333090) coding protein psRNATarget
AK071843.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||||||||||||||||*||||
targets:853   GUGUGCCUAGAUUCAUUAACAUCU   876

1.5 Oryza sativa Japonica Group cDNA clone:J023117M08, full insert sequence NA coding protein psRNATarget
AK067462.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||||||||||||||||*||||
targets:719   GUGUGCCUAGAUUCAUUAACAUCU   742

1.5 Oryza sativa Japonica Group cDNA clone:J013102C12, full insert sequence NA coding protein psRNATarget
AK104174.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||||||||||||||||*||||
targets:718   GUGUGCCUAGAUUCAUUAACAUCU   741

1.5 Oryza sativa Japonica Group cDNA clone:006-301-C05, full insert sequence NA coding protein psRNATarget
AK072999.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *||||==|||||||||||||||||
targets:1588   AUGUGUUUAGAUUCAUUAAUAUCU   1611

2.0 Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence NA coding protein psRNATarget
AK106777.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |||||=|||||||||||||*||||
targets:1344   GUGUGUCUAGAUUCAUUAACAUCU   1367

2.5 Oryza sativa Japonica Group cDNA clone:002-115-G12, full insert sequence NA coding protein psRNATarget
XM_015778632.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=||||||||||||||||||
targets:2545   AUAUGUCUAGAUUCAUUAAUAUCU   2568

1.0 PREDICTED: Oryza sativa Japonica Group glycerophosphodiester phosphodiesterase GDPDL3 (LOC4336129), mRNA glycerophosphodiester phosphodiesterase GDPDL3(LOC4336129) coding protein psRNATarget
AK070336.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=||||||||||||||||||
targets:1521   AUAUGUCUAGAUUCAUUAAUAUCU   1544

1.0 Oryza sativa Japonica Group cDNA clone:J023047B14, full insert sequence NA coding protein psRNATarget
XM_015755201.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *||||=|||||||||||||*||||
targets:1133   AUGUGUCUAGAUUCAUUAACAUCU   1156

2.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015755199.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *||||=|||||||||||||*||||
targets:1130   AUGUGUCUAGAUUCAUUAACAUCU   1153

2.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015778351.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *||||=|||||||||||||*||||
targets:692   AUGUGUCUAGAUUCAUUAACAUCU   715

2.5 PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA UPF0426 protein At1g28150, chloroplastic(LOC4336466) coding protein psRNATarget
AK065957.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *||||=|||||||||||||*||||
targets:634   AUGUGUCUAGAUUCAUUAACAUCU   657

2.5 Oryza sativa Japonica Group cDNA clone:J013044D08, full insert sequence NA coding protein psRNATarget
CT834453.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  ||||*||||||||||||||*||||
targets:851   GUGUACCUAGAUUCAUUAACAUCU   874

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115M14, full insert sequence NA coding protein psRNATarget
XM_015769168.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=||||||||||||=|||||
targets:2728   AUAUGUCUAGAUUCAUUAGUAUCU   2751

2.5 PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA probable splicing factor 3A subunit 1(LOC4328860) coding protein psRNATarget
CT836259.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  ****||||||||||||||||||||
targets:997   CCCAGCCUAGAUUCAUUAAUAUCU   1020

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115E20, full insert sequence NA coding protein psRNATarget
XM_015769449.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  ||*||=|||||||||||||*||||
targets:138   GUAUGUCUAGAUUCAUUAACAUCU   161

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF018-like (LOC107278604), mRNA ethylene-responsive transcription factor ERF018-like(LOC107278604) coding protein psRNATarget
CT835253.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  ||||*|*||||||=||||||||||
targets:778   GUGUACAUAGAUUUAUUAAUAUCU   801

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN034O04, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|||*=|||||||||||||||||*
targets:557   AUGUAUCUAGAUUCAUUAAUAUCA   580

2.0 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
XM_015763234.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|||*||||||||||||||*||||
targets:6338   AUGUACCUAGAUUCAUUAACAUCU   6361

1.5 PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA F-box protein At5g25290(LOC4326973) coding protein psRNATarget
AK242586.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|||*=|||||||||||||||||*
targets:546   AUGUAUCUAGAUUCAUUAAUAUCA   569

2.0 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
AK241537.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||||||||||||||||*||||
targets:878   AUAUGCCUAGAUUCAUUAACAUCU   901

1.5 Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence NA coding protein psRNATarget
CT836330.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||||||||||||||||*||||
targets:876   AUAUGCCUAGAUUCAUUAACAUCU   899

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence NA coding protein psRNATarget
AK099933.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=||||||||||||||||*|
targets:408   AUAUGUCUAGAUUCAUUAAUAUAU   431

2.5 Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence NA coding protein psRNATarget
AK072517.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=|||||||||||||*||||
targets:1378   AUAUGUCUAGAUUCAUUAACAUCU   1401

2.5 Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence NA coding protein psRNATarget
AK288472.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=|||||||||||||*||||
targets:1470   AUAUGUCUAGAUUCAUUAACAUCU   1493

2.5 Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence NA coding protein psRNATarget
XM_015794004.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:1370   AUAUAUCUAGAUUCAUUAAUAUCU   1393

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X3, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794002.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:1354   AUAUAUCUAGAUUCAUUAAUAUCU   1377

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X1, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794005.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:1342   AUAUAUCUAGAUUCAUUAAUAUCU   1365

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X4, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794003.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:1297   AUAUAUCUAGAUUCAUUAAUAUCU   1320

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X2, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
CT833624.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=|||||||||||||*||||
targets:1095   AUAUGUCUAGAUUCAUUAACAUCU   1118

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence NA coding protein psRNATarget
XM_015794006.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:1222   AUAUAUCUAGAUUCAUUAAUAUCU   1245

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X5, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
AK066822.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=||||||||||||||||||
targets:535   AUAUAUCUAGAUUCAUUAAUAUCU   558

1.0 Oryza sativa Japonica Group cDNA clone:J013077F20, full insert sequence NA coding protein psRNATarget
XM_015765333.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |*|||||||*|||||||||*||||
targets:2150   GCGUGCCUACAUUCAUUAACAUCU   2173

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
AK069797.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  ***||=|||||||||||||*||||
targets:431   ACAUGUCUAGAUUCAUUAACAUCU   454

2.5 Oryza sativa Japonica Group cDNA clone:J023028A18, full insert sequence NA coding protein psRNATarget
CT837661.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |*|||||||*|||||||||*||||
targets:1251   GCGUGCCUACAUUCAUUAACAUCU   1274

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence NA coding protein psRNATarget
XM_015765335.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  |*|||||||*|||||||||*||||
targets:1251   GCGUGCCUACAUUCAUUAACAUCU   1274

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
AK289050.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*||=|||*|||||||||||||*
targets:4424   AUAUGUCUAAAUUCAUUAAUAUCA   4447

3.0 Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence NA coding protein psRNATarget
AK102955.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=|||||||||||||||||*
targets:824   AUCUAUCUAGAUUCAUUAAUAUCA   847

2.0 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
XM_015766546.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:2753   AUAUACCUAGAUUCAUUAACAUCU   2776

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:2753   AUAUACCUAGAUUCAUUAACAUCU   2776

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:2753   AUAUACCUAGAUUCAUUAACAUCU   2776

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:2387   AUAUACCUAGAUUCAUUAACAUCU   2410

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:1773   AUAUACCUAGAUUCAUUAACAUCU   1796

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766553.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:583   AUAUACCUAGAUUCAUUAACAUCU   606

1.5 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
AK070352.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*=|||||||||||||||||*
targets:473   AUCUAUCUAGAUUCAUUAAUAUCA   496

2.0 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
AK288429.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*||||||||||||||*||||
targets:2526   AUUUACCUAGAUUCAUUAACAUCU   2549

1.5 Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence NA coding protein psRNATarget
AK242868.1
ncRNA:24   CACACGGAUCUAAGUAAUUAUAGA   1
  *|*|*==||||||||||||||||*
targets:1772   AUAUUUUUAGAUUCAUUAAUAUCG   1795

3.0 Oryza sativa Japonica Group cDNA, clone: J090076F12, full insert sequence NA coding protein psRNATarget
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