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BaseInfo

ncRNA ID	novel_osa_miR3512
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:738440-738527 [-]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	20
Mature sequence(if miRNA)	1 - UUUUUUAAACAUGUUUGGCC - 20
Stem-loop(if miRNA)	CU  AGU    ---       U    U  UCCCUC    UCU      U   GC   AUAU   UGAAAAG GUUA AC      CGUU   AAAUAU U   ||   ||||   ||||||| |||| ||      ||||   ||||||   CG   UGUA   AUUUUUU CAAU UG      GCAG   UUUAUA A -C  GUU    CAA       U    -  ----CC    ---      A
Stem-loop sequence	CUGCAGUAUAUUGAAAAGUGUUAUACUCCCUCCGUUUCUAAAUAUUUAAAUAUUUGACGCCGUUAACUUUUUUUAAACAUGUUUGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK240887.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:665   GGUCAAACAUGUUUAAAAAA   684 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065029G04, full insert sequence	NA	coding protein	psRNATarget
XM_015764161.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:674   GGUCAAACAUGUUUAAAAAA   693 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4351273), transcript variant X2, mRNA	macrophage migration inhibitory factor homolog(LOC4351273)	coding protein	psRNATarget
AK063389.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:395   GGUCAAACAUGUUUAAAAAA   414 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-114-G12, full insert sequence	NA	coding protein	psRNATarget
XM_015792994.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:2005   GGUCAAACAUGUUUAAAAAA   2024 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget
AK288960.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:382   GGUCAAACAUGUUUAAAAAA   401 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:2832   GGUCAAACAUGUUUAAAAAA   2851 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
AK243524.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:3118   GGUCAAACAUGUUUAAAAAA   3137 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100075M04, full insert sequence	NA	coding protein	psRNATarget
XM_015792944.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:21   GGUCAAACAUGUUUAAAAAA   40 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 5 (LOC4345956), mRNA	wall-associated receptor kinase 5(LOC4345956)	coding protein	psRNATarget
AK111819.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:3698   GGUCAAACAUGUUUAAAAAA   3717 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023009A16, full insert sequence	NA	coding protein	psRNATarget
AK288428.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:904   GGUCAAACAUGUUUAAAAAA   923 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032O10, full insert sequence	NA	coding protein	psRNATarget
AK289010.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||||||| targets:1550   GGUCAAACAUGUUUAAAAAA   1569 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090089F21, full insert sequence	NA	coding protein	psRNATarget
XM_015783460.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=|||||=||||||||||| targets:887   GGUCAAACGUGUUUAAAAAA   906 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278662 (LOC107278662), mRNA	uncharacterized LOC107278662(LOC107278662)	coding protein	psRNATarget
AK108096.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||=|||||||||||| targets:751   GGUCAAAUAUGUUUAAAAAA   770 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-139-A08, full insert sequence	NA	coding protein	psRNATarget
XM_015787231.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||=|||||||||||| targets:755   GGUCAAAUAUGUUUAAAAAA   774 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339918 (LOC4339918), mRNA	uncharacterized LOC4339918(LOC4339918)	coding protein	psRNATarget
AK288860.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=||||||||||||=|||| targets:3293   GGUCAAACAUGUUUAGAAAA   3312 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090077C13, full insert sequence	NA	coding protein	psRNATarget
XM_015764314.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||==|||||||||||||||| targets:215   GGUUAAACAUGUUUAAAAAA   234 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative L-type lectin-domain containing receptor kinase I.4 (LOC4326097), mRNA	putative L-type lectin-domain containing receptor kinase I.4(LOC4326097)	coding protein	psRNATarget
BT131706.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||*||||||||||||||||| targets:2   GGGCAAACAUGUUUAAAAAA   21 Target Full Sequence	1.0	Oryza sativa clone RRlibD00056 mRNA sequence	NA	coding protein	psRNATarget
AK288523.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=|||||||*||||||||| targets:48   GGUCAAACAUAUUUAAAAAA   67 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044C01, full insert sequence	NA	coding protein	psRNATarget
AK065369.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=|||||||*||||||||| targets:1573   GGUCAAACAUUUUUAAAAAA   1592 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023A04, full insert sequence	NA	coding protein	psRNATarget
AK242848.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=|||||||*||||||||| targets:3202   GGUCAAACAUAUUUAAAAAA   3221 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072L17, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   |*=||||||||||||||||| targets:2432   GAUCAAACAUGUUUAAAAAA   2451 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget
AK289044.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   ||=|||||||*||||||||| targets:1479   GGUCAAACAUAUUUAAAAAA   1498 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092F18, full insert sequence	NA	coding protein	psRNATarget
AK071187.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|||||||*||||||||| targets:1187   AGUCAAACAUAUUUAAAAAA   1206 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023086M24, full insert sequence	NA	coding protein	psRNATarget
AK064810.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|||||||||||*||||| targets:2087   AGUCAAACAUGUUUCAAAAA   2106 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000D21, full insert sequence	NA	coding protein	psRNATarget
XM_015767565.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|||||||||||*||||| targets:2087   AGUCAAACAUGUUUCAAAAA   2106 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized RNA-binding protein P16F5.06 (LOC4328244), mRNA	uncharacterized RNA-binding protein P16F5.06(LOC4328244)	coding protein	psRNATarget
AK288724.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=*|||||||||||||||| targets:219   AGUAAAACAUGUUUAAAAAA   238 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063A16, full insert sequence	NA	coding protein	psRNATarget
XM_015790985.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=*|||||||||||||||| targets:213   AGUAAAACAUGUUUAAAAAA   232 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278583 (LOC107278583), mRNA	uncharacterized LOC107278583(LOC107278583)	coding protein	psRNATarget
XM_015789291.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|*|=||||||||||||| targets:989   UGUCUAGCAUGUUUAAAAAA   1008 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA-binding protein RHL1 (LOC4342516), transcript variant X1, mRNA	DNA-binding protein RHL1(LOC4342516)	coding protein	psRNATarget
XM_015789292.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|*|=||||||||||||| targets:992   UGUCUAGCAUGUUUAAAAAA   1011 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA-binding protein RHL1 (LOC4342516), transcript variant X2, mRNA	DNA-binding protein RHL1(LOC4342516)	coding protein	psRNATarget
AK103352.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   *|=|*|=||||||||||||| targets:951   UGUCUAGCAUGUUUAAAAAA   970 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033126I17, full insert sequence	NA	coding protein	psRNATarget
AK288408.1	ncRNA:20   CCGGUUUGUACAAAUUUUUU   1   |*=*|||||||||||||||| targets:2986   GAUGAAACAUGUUUAAAAAA   3005 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090030J08, full insert sequence	NA	coding protein	psRNATarget