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BaseInfo

ncRNA ID	novel_osa_miR3511
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:5026600-5026696 [-]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	21
Mature sequence(if miRNA)	1 - UAGGUUGUUAUAUUAUGGGAC - 21
Stem-loop(if miRNA)	--                   A      -A    -    -    UAGUAC   CCUAUAAUAUAGCAAUCUA AAUUGG  UGGG ACAU UUCA      A   ||||||||||||||||||| ||||||  |||| |||| ||||   GGGUAUUAUAUUGUUGGAU UUGGCC  GUCU UGUA AAGU      A CA                   C      AG    A    C    CUAAGC
Stem-loop sequence	CCUAUAAUAUAGCAAUCUAAAAUUGGAUGGGACAUUUCAUAGUACAACGAAUCUGAACAUGUAUCUGGACCGGUUCUAGGUUGUUAUAUUAUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242713.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||||||||||||||||||| targets:1465   GUCCCAUAAUAUAACAACCUA   1485 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090041O10, full insert sequence	NA	coding protein	psRNATarget
AK121526.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||=||||||||=||||||| targets:1683   GUCCUAUAAUAUAGCAACCUA   1703 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033030B10, full insert sequence	NA	coding protein	psRNATarget
XM_015768091.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||=||||||||=||||||| targets:1682   GUCCUAUAAUAUAGCAACCUA   1702 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mRNA cap guanine-N7 methyltransferase 2 (LOC4330921), mRNA	mRNA cap guanine-N7 methyltransferase 2(LOC4330921)	coding protein	psRNATarget
JB164434.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   |||||||||||||||||||*| targets:17   GUCCCAUAAUAUAACAACCCA   37 Target Full Sequence	1.5	Sequence 2098 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236103.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   |||||||||||||||||||*| targets:17   GUCCCAUAAUAUAACAACCCA   37 Target Full Sequence	1.5	Sequence 2098 from Patent EP2985353	NA	coding protein	psRNATarget
HI403973.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   |||||||||||||||||||*| targets:17   GUCCCAUAAUAUAACAACCCA   37 Target Full Sequence	1.5	Sequence 2098 from Patent EP2074227	NA	coding protein	psRNATarget
AK064349.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||||*||||||||||=||| targets:1665   GUCCCAAAAUAUAACAAUCUA   1685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-108-A03, full insert sequence	NA	coding protein	psRNATarget
AK120297.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||||*||||||=||||||| targets:1007   GUCCCAGAAUAUAGCAACCUA   1027 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013051O08, full insert sequence	NA	coding protein	psRNATarget
AK288243.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||||*|||=|||||||||| targets:2214   GUCCCAGAAUGUAACAACCUA   2234 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014A15, full insert sequence	NA	coding protein	psRNATarget
AK108283.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||=|=|*|||||||||||||| targets:946   GUUCUAAAAUAUAACAACCUA   966 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-141-D03, full insert sequence	NA	coding protein	psRNATarget
XM_015776212.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||=|=|*|||||||||||||| targets:942   GUUCUAAAAUAUAACAACCUA   962 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group short-chain type dehydrogenase/reductase (LOC4334104), mRNA	short-chain type dehydrogenase/reductase(LOC4334104)	coding protein	psRNATarget
CT831387.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||=|=|*|||||||||||||| targets:948   GUUCUAAAAUAUAACAACCUA   968 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033K10, full insert sequence	NA	coding protein	psRNATarget
AK288262.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   **||=|||||||||=|||||| targets:300   CACCUAUAAUAUAAUAACCUA   320 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence	NA	coding protein	psRNATarget
AK063060.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*||||||=||||||| targets:542   AUCCCAGAAUAUAGCAACCUA   562 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-110-F08, full insert sequence	NA	coding protein	psRNATarget
AK066050.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||=|*|||||||||||||| targets:913   AUCCUAAAAUAUAACAACCUA   933 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013050F13, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   ||||||*|||||||*|||||| targets:1897   GUCCCAAAAUAUAAGAACCUA   1917 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
XM_015760308.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*|||||||*|||||| targets:1644   AUCCCAAAAUAUAAAAACCUA   1664 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative F-box/LRR-repeat protein At5g02930 (LOC4350047), transcript variant X2, mRNA	putative F-box/LRR-repeat protein At5g02930(LOC4350047)	coding protein	psRNATarget
AK067328.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*|||||||*|||||| targets:1740   AUCCCAAAAUAUAAAAACCUA   1760 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013104C16, full insert sequence	NA	coding protein	psRNATarget
XM_015760307.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*|||||||*|||||| targets:1748   AUCCCAAAAUAUAAAAACCUA   1768 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative F-box/LRR-repeat protein At5g02930 (LOC4350047), transcript variant X1, mRNA	putative F-box/LRR-repeat protein At5g02930(LOC4350047)	coding protein	psRNATarget
XM_015765354.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*|||||||*|||||| targets:530   AUCCCAAAAUAUAAGAACCUA   550 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative 12-oxophytodienoate reductase 13 (LOC107279822), transcript variant X2, mRNA	putative 12-oxophytodienoate reductase 13(LOC107279822)	coding protein	psRNATarget
AK288217.1	ncRNA:21   CAGGGUAUUAUAUUGUUGGAU   1   *|||||*|||||||*|||||| targets:803   UUCCCAAAAUAUAAAAACCUA   823 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011F09, full insert sequence	NA	coding protein	psRNATarget