Search result

BaseInfo

ncRNA ID	novel_osa_miR3509
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:11453461-11453554 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2099567;SRR1556020
Length	23
Mature sequence(if miRNA)	72 - UUAAUAUAUUAUAGGUGUCGGUU - 94
Stem-loop(if miRNA)	--    UAU                     -      -     AAAAU   UUAA   AUUAUAGGUGUCGGUUUUAAA AAAAAC GACAC     A   ||||   ||||||||||||||||||||| |||||| |||||   AAUU   UAAUAUCCACAGUCAAGGUUU UUUUUG UUGUG     U GA    CAU                     A      G     AAUAA
Stem-loop sequence	UUAAUAUAUUAUAGGUGUCGGUUUUAAAAAAAACGACACAAAAUAUAAUAAGUGUUGGUUUUUAUUUGGAACUGACACCUAUAAUUACUUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070414.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||||||||||||||||||||* targets:1139   AACCGACACCUAUAAUAUAUUAC   1161 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   |||||=|||=||||||||||||* targets:1098   AACCGGCACUUAUAAUAUAUUAU   1120 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK288739.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||||=|||||||||||||||* targets:2647   AACCGAUACCUAUAAUAUAUUAU   2669 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063N20, full insert sequence	NA	coding protein	psRNATarget
AK288826.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   |||||||||||||||*||||||* targets:4707   AACCGACACCUAUAAGAUAUUAU   4729 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
AB510478.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||*|=||=||||||||||||| targets:250   AACCUAUACUUAUAAUAUAUUAA   272 Target Full Sequence	3.0	Oryza sativa Indica Group Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: C9285	NA	coding protein	psRNATarget
XM_015773629.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||*|||=|||||||||||||* targets:877   AACCAACAUCUAUAAUAUAUUAU   899 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK288845.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||=||||||||||||*||||||* targets:3732   AAUCGACACCUAUAAAAUAUUAU   3754 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075D02, full insert sequence	NA	coding protein	psRNATarget
AK288922.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||*|||=|||||||||||||* targets:1072   AACCAACAUCUAUAAUAUAUUAU   1094 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   ||||*|||=|||||||||||||* targets:1597   AACCAACAUCUAUAAUAUAUUAU   1619 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK069235.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   |||=|=*|||||||||||||||* targets:3418   AACUGGGACCUAUAAUAUAUUAU   3440 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023010D04, full insert sequence	NA	coding protein	psRNATarget
AK288262.1	ncRNA:23   UUGGCUGUGGAUAUUAUAUAAUU   1   |||=*||||||||||||||*||| targets:294   AACUAACACCUAUAAUAUAAUAA   316 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence	NA	coding protein	psRNATarget