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BaseInfo

ncRNA ID	novel_osa_miR3508
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:11455535-11455605 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2099567;SRR4407956;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - CUAUAAUAUAUUAUAGAUGUCGGU - 24
Stem-loop(if miRNA)	--     A            U   G C      UU   CGGCA CUAUAAUAUAUU UAG U UCAGUU  U   ||||| |||||||||||| ||| | ||||||  A   GCUGU GAUAUUAUAUAA AUC A AGUUAA  A UG     A            U   G C      UU
Stem-loop sequence	CGGCAACUAUAAUAUAUUUUAGGUCUCAGUUUUUAAUUAAUUGACAGCUAUAAUAUAUUAUAGAUGUCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773629.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||*|||||||||||||||||||| targets:878   ACCAACAUCUAUAAUAUAUUAUAG   901 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650 (LOC4332910), mRNA	GDSL esterase/lipase At1g28650(LOC4332910)	coding protein	psRNATarget
AK288922.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||*|||||||||||||||||||| targets:1073   ACCAACAUCUAUAAUAUAUUAUAG   1096 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090081M23, full insert sequence	NA	coding protein	psRNATarget
XM_015773630.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||*|||||||||||||||||||| targets:1598   ACCAACAUCUAUAAUAUAUUAUAG   1621 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At1g28650-like (LOC107278316), mRNA	GDSL esterase/lipase At1g28650-like(LOC107278316)	coding protein	psRNATarget
AK070414.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   ||||=||*=||||||||||||||| targets:1099   ACCGGCACUUAUAAUAUAUUAUAG   1122 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||||||*|||||||||||||*|| targets:1140   ACCGACACCUAUAAUAUAUUACAG   1163 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK288739.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||||=|*|||||||||||||||* targets:2648   ACCGAUACCUAUAAUAUAUUAUAU   2671 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090063N20, full insert sequence	NA	coding protein	psRNATarget
AK288739.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |**|==||||*||||||||||||* targets:2598   AAAGGUAUCUUUAAUAUAUUAUAU   2621 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090063N20, full insert sequence	NA	coding protein	psRNATarget
AK288826.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |||||||*||||||*||||||||| targets:4708   ACCGACACCUAUAAGAUAUUAUAG   4731 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
AK288845.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   |=|||||*||||||*||||||||| targets:3733   AUCGACACCUAUAAAAUAUUAUAG   3756 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075D02, full insert sequence	NA	coding protein	psRNATarget
AK069235.1	ncRNA:24   UGGCUGUAGAUAUUAUAUAAUAUC   1   ||=|=*|*|||||||||||||||| targets:3419   ACUGGGACCUAUAAUAUAUUAUAG   3442 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023010D04, full insert sequence	NA	coding protein	psRNATarget