Search result

BaseInfo

ncRNA ID	novel_osa_miR3505
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:25745152-25745262 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	21
Mature sequence(if miRNA)	91 - UCAAGAACCGUAGAAUUGCUC - 111
Stem-loop(if miRNA)	--    A     ACC       ACCU     U         CCAUUAA   UC      UA   GUAA UUUAU   UCUUGAU    AGGUA UAUGAGAUA       GUA  AAAUUU  C   |||| |||||   |||||||    ||||| |||||||||       |||  ||||||   CGUU AGAUG   AGAACUA    UCCAU GUACUCUAU       UAU  UUUAAA  A CU    A     CCA       ---C     U         -------   -U      UC
Stem-loop sequence	GUAAAUUUAUACCUCUUGAUACCUAGGUAUUAUGAGAUACCAUUAAGUAUCAAAUUUUACACUAAAUUUUUAUUAUCUCAUGUUACCUCAUCAAGAACCGUAGAAUUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066407.1	ncRNA:21   CUCGUUAAGAUGCCAAGAACU   1   ||||||||=|||||||||||| targets:3813   GAGCAAUUUUACGGUUCUUGA   3833 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063J08, full insert sequence	NA	coding protein	psRNATarget
AK288954.1	ncRNA:21   CUCGUUAAGAUGCCAAGAACU   1   ||||||||=|||||||||||| targets:3532   GAGCAAUUUUACGGUUCUUGA   3552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083O05, full insert sequence	NA	coding protein	psRNATarget
XM_015789833.1	ncRNA:21   CUCGUUAAGAUGCCAAGAACU   1   |||||||||||||||||||*| targets:3209   GAGCAAUUCUACGGUUCUUAA   3229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4324067), mRNA	receptor-like protein 12(LOC4324067)	coding protein	psRNATarget
XM_015786027.1	ncRNA:21   CUCGUUAAGAUGCCAAGAACU   1   *||||||||||||||*||||| targets:4597   AAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget