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BaseInfo

ncRNA ID	novel_osa_miR3498
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27062319-27062378 [-]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	24
Mature sequence(if miRNA)	37 - ACAUCCUGGUACUACGAAUCUGAA - 60
Stem-loop(if miRNA)	--C   G             A   UG ACAU   CUG UACUACGAAUCUG AUA  C ||||   ||| ||||||||||||| ||| UGUA   GAC AUGAUGCUUAGAC UGU  C     UAA   A             C   CC
Stem-loop sequence	ACAUCCUGGUACUACGAAUCUGAAUAUGCCCCUGUCCAGAUUCGUAGUAACAGAAUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288799.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   ||=||=||||||||||=||||||| targets:2751   UUUAGGUUCGUAGUACUAGGAUGU   2774 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget
AK120794.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*|=||||||||||||=||||||| targets:1570   UCCGGAUUCGUAGUACUAGGAUGU   1593 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023012B12, full insert sequence	NA	coding protein	psRNATarget
XM_015778463.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*|=||||||||||||=||||||| targets:1631   UCCGGAUUCGUAGUACUAGGAUGU   1654 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cis-zeatin O-glucosyltransferase 1 (LOC4336629), mRNA	cis-zeatin O-glucosyltransferase 1(LOC4336629)	coding protein	psRNATarget
AK071898.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-|||||||||||||=||||||| targets:2717   GUCUAGAUUCGUAGUACUAGGAUGU   2741 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-|||||||||||||=||||||| targets:2733   GUCUAGAUUCGUAGUACUAGGAUGU   2757 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
XM_015767398.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-|||||||||||||=||||||| targets:3798   AUCUAGAUUCGUAGUACUAGGAUGU   3822 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767397.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-|||||||||||||=||||||| targets:3801   AUCUAGAUUCGUAGUACUAGGAUGU   3825 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767396.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-|||||||||||||=||||||| targets:3946   AUCUAGAUUCGUAGUACUAGGAUGU   3970 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
AK109681.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*|*||||=|||||||=||||||| targets:1725   UACUGAUUUGUAGUACUAGGAUGU   1748 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015783505.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*|*||||=|||||||=||||||| targets:1718   UACUGAUUUGUAGUACUAGGAUGU   1741 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4337710), mRNA	UPF0481 protein At3g47200(LOC4337710)	coding protein	psRNATarget
AK119339.1	ncRNA:24   AAG-UCUAAGCAUCAUGGUCCUACA   1   *||-||||||*||||||=||||||| targets:339   GUCUAGAUUCAUAGUACUAGGAUGU   363 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
HI403965.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*||*||||*||||||=||||||| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	2.5	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
JB164426.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*||*||||*||||||=||||||| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	2.5	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236095.1	ncRNA:24   AAGUCUAAGCAUCAUGGUCCUACA   1   |*||*||||*||||||=||||||| targets:34   UCCAAAUUCAUAGUACUAGGAUGU   57 Target Full Sequence	2.5	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget