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BaseInfo

ncRNA ID	novel_osa_miR3497
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:35415957-35416167 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390;SRR5049786
Length	22
Mature sequence(if miRNA)	1 - UUAAUGUAUAACACCGUUGACU - 22
Stem-loop(if miRNA)	--         AACA       C    CGA                              UU  CG     A   GAAAGUAUUUAUAUCAUGCUUAAAGAACAU   UUAAUGUAU    CCGUUGA UUUU   CCAACGUUUGACCAUUCGUUUUAUUUAAAA  UU  UGCAA UAU                              U   |||||||||    ||||||| ||||   ||||||||||||||||||||||||||||||  ||  ||||| |||                              U   AAUUACAUA    GGCAACU AAAA   GGUUGCAAACUGGUAAGUAAAAUAAGUUUU  AA  AUGUU AUA                              G AA         CUAC       A    AUA                              UU  AU     A   GUAAAUAAAAUAAUACUGAGCUAAGUAGUA
Stem-loop sequence	UUAAUGUAUAACACCGUUGACUUUUCGACCAACGUUUGACCAUUCGUUUUAUUUAAAAUUUUCGUGCAAAUAUGAAAGUAUUUAUAUCAUGCUUAAAGAACAUUUGAUGAUGAAUCGAGUCAUAAUAAAAUAAAUGAUAAUUGUAUAAAUUUUUUGAAUAAAAUGAAUGGUCAAACGUUGGAUAAAAAAUCAACGGCAUCAUACAUUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779378.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   ||||||||||||*||||||||| targets:11   AGUCAACGGUGUCAUACAUUAA   32 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group omega-hydroxypalmitate O-feruloyl transferase (LOC9266238), transcript variant X1, mRNA	omega-hydroxypalmitate O-feruloyl transferase(LOC9266238)	coding protein	psRNATarget
XM_015768863.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   *||||||||*|||||||||||| targets:236   UGUCAACGGCGUUAUACAUUAA   257 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK288521.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   *||||||||*|||||||||||| targets:242   UGUCAACGGCGUUAUACAUUAA   263 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget
AK099749.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   |*||||||||||*||||||||| targets:87   AAUCAACGGUGUCAUACAUUAA   108 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013091P17, full insert sequence	NA	coding protein	psRNATarget
XM_015779878.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   |*||||||||||*||||||||| targets:360   AAUCAACGGUGUCAUACAUUAA   381 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
AK288429.1	ncRNA:22   UCAGUUGCCACAAUAUGUAAUU   1   |*|=||||||||*||||||||| targets:3465   AUUUAACGGUGUCAUACAUUAA   3486 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget