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BaseInfo

ncRNA ID	novel_osa_miR3496
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:27723177-27723328 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - CAACUUUUCUGUCACAUCGUUCUA - 24
Stem-loop(if miRNA)	--            -     U  U                          -U  CC   -UUU    CCAAAAUAAU   GAACGAUGUGAU GAAAA UU GAAGUUUGUGUGUGUAGGAAAGUUUU  UG  GUG    AGUU          U   |||||||||||| ||||| || ||||||||||||||||||||||||||  ||  |||    ||||          C   CUUGCUACACUG CUUUU AA UUUCAAACACAUACAUCUUUUCAAAA  AC  UAC    UCAA          U AU            U     C  C                          CU  AC   UUUU    CCUUCAAACU
Stem-loop sequence	GAACGAUGUGAUGAAAAUUUUGAAGUUUGUGUGUGUAGGAAAGUUUUUUGCCGUGUUUAGUUCCAAAAUAAUUCUUCAAACUUCCAACUUUUUCAUCACAUCAAAACUUUUCUACAUACACAAACUUUCAACUUUUCUGUCACAUCGUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK106655.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||||||||||||||=||||||||| targets:467   UAGAACGAUGUGACGGAAAAGUUG   490 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence	NA	coding protein	psRNATarget
AK102150.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||||||||||||||||| targets:1053   UGGAACGAUGUGACAGAAAAGUUG   1076 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033086D17, full insert sequence	NA	coding protein	psRNATarget
XM_015780693.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||||||||||||||||| targets:1100   UGGAACGAUGUGACAGAAAAGUUG   1123 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group tubulin-folding cofactor B (LOC4337511), mRNA	tubulin-folding cofactor B(LOC4337511)	coding protein	psRNATarget
AK109584.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||||||||||||||=||||||||| targets:433   UAGAACGAUGUGACGGAAAAGUUG   456 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
AK105537.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||||||||||||||||| targets:945   UGGAACGAUGUGACAGAAAAGUUG   968 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence	NA	coding protein	psRNATarget
BT132151.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:290   UGGAACGAUGUGACGGAAAAGUUG   313 Target Full Sequence	1.5	Oryza sativa clone RRlibB00324 mRNA sequence	NA	coding protein	psRNATarget
XM_015772976.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||||||||||||||||||||||* targets:2141   UAGAACGAUGUGACAGAAAAGUUA   2164 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group proline-rich receptor-like protein kinase PERK4 (LOC4334291), mRNA	proline-rich receptor-like protein kinase PERK4(LOC4334291)	coding protein	psRNATarget
XM_015757809.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:823   UGGAACGAUGUGACGGAAAAGUUG   846 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277943 (LOC107277943), transcript variant X2, mRNA	uncharacterized LOC107277943(LOC107277943)	coding protein	psRNATarget
XM_015757808.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:964   UGGAACGAUGUGACGGAAAAGUUG   987 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277943 (LOC107277943), transcript variant X1, mRNA	uncharacterized LOC107277943(LOC107277943)	coding protein	psRNATarget
XM_015781950.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:1754   UGGAACGAUGUGACGGAAAAGUUG   1777 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable tRNA N6-adenosine threonylcarbamoyltransferase (LOC4338033), mRNA	probable tRNA N6-adenosine threonylcarbamoyltransferase(LOC4338033)	coding protein	psRNATarget
XM_015793142.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||||=||||||||=||||||||| targets:192   UAGAAUGAUGUGACGGAAAAGUUG   215 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acidic endochitinase SE2 (LOC4327951), transcript variant X4, mRNA	acidic endochitinase SE2(LOC4327951)	coding protein	psRNATarget
XM_015793121.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||||=||||||||=||||||||| targets:192   UAGAAUGAUGUGACGGAAAAGUUG   215 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group acidic endochitinase SE2 (LOC4327951), transcript variant X1, mRNA	acidic endochitinase SE2(LOC4327951)	coding protein	psRNATarget
AK288868.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:5738   UGGAACGAUGUGACGGAAAAGUUG   5761 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
XM_015762999.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||| targets:3473   UGGAACGAUGUGACGGAAAAGUUG   3496 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327079 (LOC4327079), transcript variant X2, mRNA	uncharacterized LOC4327079(LOC4327079)	coding protein	psRNATarget
BT129074.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||=||||||||=||||||||| targets:665   UGGAAUGAUGUGACGGAAAAGUUG   688 Target Full Sequence	2.5	Oryza sativa clone RRlibA00353 mRNA sequence	NA	coding protein	psRNATarget
AK106442.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||||||||||||||*||||||||| targets:803   UAGAACGAUGUGACCGAAAAGUUG   826 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-103-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015773884.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||=||||||||=||||||||| targets:2165   UGGAAUGAUGUGACGGAAAAGUUG   2188 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333380 (LOC4333380), mRNA	uncharacterized LOC4333380(LOC4333380)	coding protein	psRNATarget
XM_015789441.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||=||||||||=||||||||| targets:2582   UGGAAUGAUGUGACGGAAAAGUUG   2605 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.2 (LOC4342338), mRNA	L-type lectin-domain containing receptor kinase IV.2(LOC4342338)	coding protein	psRNATarget
AK241059.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*|||||||||||=||||||||| targets:331   UACAACGAUGUGACGGAAAAGUUG   354 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065064L15, full insert sequence	NA	coding protein	psRNATarget
XM_015773695.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||* targets:71   UGGAACGAUGUGACGGAAAAGUUA   94 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X3, mRNA	putative ubiquitin-like-specific protease 1B(LOC9268223)	coding protein	psRNATarget
XM_015773694.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||* targets:1022   UGGAACGAUGUGACGGAAAAGUUA   1045 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA	putative ubiquitin-like-specific protease 1B(LOC9268223)	coding protein	psRNATarget
XM_015762148.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||* targets:161   UGGAACGAUGUGACGGAAAAGUUU   184 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350133), transcript variant X1, mRNA	disease resistance protein RPM1(LOC4350133)	coding protein	psRNATarget
AK099802.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||* targets:1028   UGGAACGAUGUGACGGAAAAGUUA   1051 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence	NA	coding protein	psRNATarget
XM_015769012.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||||||||||=||||||||* targets:3319   UGGAACGAUGUGACGGAAAAGUUU   3342 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2-like (LOC107277690), transcript variant X1, mRNA	disease resistance protein RGA2-like(LOC107277690)	coding protein	psRNATarget
AK241047.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||||||*|||||||=||||||||| targets:2139   UAGAACAAUGUGACGGAAAAGUUG   2162 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065061J05, full insert sequence	NA	coding protein	psRNATarget
XM_015768047.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||||||*|||||||=||||||||| targets:2150   UAGAACAAUGUGACGGAAAAGUUG   2173 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328240 (LOC4328240), mRNA	uncharacterized LOC4328240(LOC4328240)	coding protein	psRNATarget
AK288882.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*||||||||||||||||||||| targets:1437   UGAAACGAUGUGACAGAAAAGUUG   1460 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090079H14, full insert sequence	NA	coding protein	psRNATarget
XM_015772519.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||||||||*|||||||||||||* targets:1475   UAGAACGAUUUGACAGAAAAGUUA   1498 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor-like protein DPB (LOC4331648), transcript variant X4, mRNA	transcription factor-like protein DPB(LOC4331648)	coding protein	psRNATarget
XM_015772518.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||||||||*|||||||||||||* targets:1574   UAGAACGAUUUGACAGAAAAGUUA   1597 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group transcription factor-like protein DPB (LOC4331648), transcript variant X3, mRNA	transcription factor-like protein DPB(LOC4331648)	coding protein	psRNATarget
XM_015779425.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||*||||=||||||||| targets:1043   UGGAACGAUAUGACGGAAAAGUUG   1066 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GTE7 (LOC4337040), mRNA	transcription factor GTE7(LOC4337040)	coding protein	psRNATarget
CT832209.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:1461   UGAAACGAUGUGACGGAAAAGUUG   1484 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI235F15, full insert sequence	NA	coding protein	psRNATarget
XM_015775562.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:1682   UGAAACGAUGUGACGGAAAAGUUG   1705 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277676 (LOC107277676), transcript variant X3, mRNA	uncharacterized LOC107277676(LOC107277676)	coding protein	psRNATarget
XM_015775560.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:1748   UGAAACGAUGUGACGGAAAAGUUG   1771 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277676 (LOC107277676), transcript variant X2, mRNA	uncharacterized LOC107277676(LOC107277676)	coding protein	psRNATarget
XM_015775559.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:1902   UGAAACGAUGUGACGGAAAAGUUG   1925 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277676 (LOC107277676), transcript variant X1, mRNA	uncharacterized LOC107277676(LOC107277676)	coding protein	psRNATarget
AK065967.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:1315   UGAAACGAUGUGACGGAAAAGUUG   1338 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013049E01, full insert sequence	NA	coding protein	psRNATarget
AK240898.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||*||||||||=||||||||| targets:2822   UGGAAAGAUGUGACGGAAAAGUUG   2845 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065032M10, full insert sequence	NA	coding protein	psRNATarget
XM_015761416.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||*||||||||=||||||||| targets:3018   UGGAAAGAUGUGACGGAAAAGUUG   3041 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X1, mRNA	uncharacterized LOC9270662(LOC9270662)	coding protein	psRNATarget
XM_015779453.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||| targets:3638   UGUAACGAUGUGACGGAAAAGUUG   3661 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group formin-like protein 5 (LOC107280667), mRNA	formin-like protein 5(LOC107280667)	coding protein	psRNATarget
XM_015761417.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||*||||||||=||||||||| targets:3683   UGGAAAGAUGUGACGGAAAAGUUG   3706 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270662 (LOC9270662), transcript variant X2, mRNA	uncharacterized LOC9270662(LOC9270662)	coding protein	psRNATarget
XM_015791314.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||*||||||=|||||||||| targets:2472   UGGAACAAUGUGAUAGAAAAGUUG   2495 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget
AK289150.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*||||||||||=|||||||||| targets:1404   UGAAACGAUGUGAUAGAAAAGUUG   1427 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
XM_015785325.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||*||||=||||||||| targets:3292   UGGAACGAUUUGACGGAAAAGUUG   3315 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g39530 (LOC4339436), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g39530(LOC4339436)	coding protein	psRNATarget
AY551921.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   ||||-||||||||||*||||||||| targets:635   UAGAGACGAUGUGACUGAAAAGUUG   659 Target Full Sequence	1.5	Oryza sativa Japonica Group MADS-box protein RMADS216 mRNA, complete cds	NA	coding protein	psRNATarget
XM_015793275.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   ||||-||||||||||*||||||||| targets:635   UAGAGACGAUGUGACUGAAAAGUUG   659 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 7 (LOC4346134), transcript variant X1, mRNA	MADS-box transcription factor 7(LOC4346134)	coding protein	psRNATarget
AK242723.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|||||||*||||=||||||||| targets:4073   UGGAACGAUUUGACGGAAAAGUUG   4096 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090045G15, full insert sequence	NA	coding protein	psRNATarget
CT832186.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||=||||||||* targets:368   UGAAACGAUGUGACGGAAAAGUUA   391 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029G23, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |*||-|||||||||=|||||||||| targets:6068   UUGAUACGAUGUGAUAGAAAAGUUG   6092 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
CT831274.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||**|||||||||=|||||||||| targets:880   UAUCACGAUGUGAUAGAAAAGUUG   903 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA007A02, full insert sequence	NA	coding protein	psRNATarget
AK109759.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||**|||||||||=|||||||||| targets:938   UAUCACGAUGUGAUAGAAAAGUUG   961 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-G07, full insert sequence	NA	coding protein	psRNATarget
AK241600.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |||*|=||||||||*||||||||| targets:1269   UAGUAUGAUGUGACUGAAAAGUUG   1292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065183H21, full insert sequence	NA	coding protein	psRNATarget
XM_015759733.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||| targets:2429   UGGUACGAUGUGACUGAAAAGUUG   2452 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X4, mRNA	mannose/glucose-specific lectin(LOC4350895)	coding protein	psRNATarget
XM_015759731.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||| targets:2473   UGGUACGAUGUGACUGAAAAGUUG   2496 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X2, mRNA	mannose/glucose-specific lectin(LOC4350895)	coding protein	psRNATarget
XM_015759732.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||| targets:2511   UGGUACGAUGUGACUGAAAAGUUG   2534 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X3, mRNA	mannose/glucose-specific lectin(LOC4350895)	coding protein	psRNATarget
XM_015759729.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||| targets:2521   UGGUACGAUGUGACUGAAAAGUUG   2544 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mannose/glucose-specific lectin (LOC4350895), transcript variant X1, mRNA	mannose/glucose-specific lectin(LOC4350895)	coding protein	psRNATarget
AK241609.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||| targets:2571   UGGUACGAUGUGACUGAAAAGUUG   2594 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065185L18, full insert sequence	NA	coding protein	psRNATarget
XM_015782568.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:770   UGGAGAUGAUGUGACUGAAAAGUUG   794 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337983 (LOC4337983), mRNA	uncharacterized LOC4337983(LOC4337983)	coding protein	psRNATarget
AK288700.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||**|||||||||=|||||||||| targets:904   UAUCACGAUGUGAUAGAAAAGUUG   927 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061D24, full insert sequence	NA	coding protein	psRNATarget
CT828001.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:856   UGGAGAUGAUGUGACUGAAAAGUUG   880 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA060D24, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||||||||||*||||||||| targets:343   UGAAACGAUGUGACUGAAAAGUUG   366 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK069367.1	ncRNA:24   AUCUUGCUAC-ACUGUCUUUUCAAC   1   |*|=|=||||-|||||||||||||| targets:854   UUGGAUGAUGAUGACAGAAAAGUUG   878 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023012O03, full insert sequence	NA	coding protein	psRNATarget
XM_015781648.1	ncRNA:24   AUCUUGCUAC-ACUGUCUUUUCAAC   1   |*|=|=||||-|||||||||||||| targets:872   UUGGAUGAUGAUGACAGAAAAGUUG   896 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein disulfide isomerase-like 5-2 (LOC4335881), mRNA	protein disulfide isomerase-like 5-2(LOC4335881)	coding protein	psRNATarget
AK241842.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:2271   UGGAGAUGAUGUGACUGAAAAGUUG   2295 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065214A10, full insert sequence	NA	coding protein	psRNATarget
CT836005.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*||||||||||||*|||||||* targets:24   UAAAACGAUGUGACAAAAAAGUUA   47 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020G20, full insert sequence	NA	coding protein	psRNATarget
XM_015782461.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:972   UGGAGAUGAUGUGACUGAAAAGUUG   996 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339230 (LOC4339230), mRNA	uncharacterized LOC4339230(LOC4339230)	coding protein	psRNATarget
XM_015755754.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:1713   UGGAGAUGAUGUGACUGAAAAGUUG   1737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein transport protein sec31 (LOC9268165), mRNA	protein transport protein sec31(LOC9268165)	coding protein	psRNATarget
XM_015761765.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3674   UGGAGAUGAUGUGACUGAAAAGUUG   3698 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC9271293), transcript variant X3, mRNA	disease resistance protein RPM1(LOC9271293)	coding protein	psRNATarget
XM_015761763.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3680   UGGAGAUGAUGUGACUGAAAAGUUG   3704 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC9271293), transcript variant X1, mRNA	disease resistance protein RPM1(LOC9271293)	coding protein	psRNATarget
AK289101.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:1153   UGGAGAUGAUGUGACUGAAAAGUUG   1177 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096F16, full insert sequence	NA	coding protein	psRNATarget
XM_015771159.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3554   UGGAGAUGAUGUGACUGAAAAGUUG   3578 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X3, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771158.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3561   UGGAGAUGAUGUGACUGAAAAGUUG   3585 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X2, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771164.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3613   UGGAGAUGAUGUGACUGAAAAGUUG   3637 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X8, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771162.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3699   UGGAGAUGAUGUGACUGAAAAGUUG   3723 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X6, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
AK242628.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3733   UGGAGAUGAUGUGACUGAAAAGUUG   3757 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020K10, full insert sequence	NA	coding protein	psRNATarget
XM_015771160.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:3830   UGGAGAUGAUGUGACUGAAAAGUUG   3854 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X4, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771163.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:4029   UGGAGAUGAUGUGACUGAAAAGUUG   4053 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X7, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771161.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:4112   UGGAGAUGAUGUGACUGAAAAGUUG   4136 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X5, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015771157.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-|=||||||||*||||||||| targets:4144   UGGAGAUGAUGUGACUGAAAAGUUG   4168 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC9267918), transcript variant X1, mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC9267918)	coding protein	psRNATarget
XM_015789898.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*||||||||||||||||||*|* targets:1357   UAAAACGAUGUGACAGAAAAGAUC   1380 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WAT1-related protein At5g64700 (LOC4343427), mRNA	WAT1-related protein At5g64700(LOC4343427)	coding protein	psRNATarget
AK242035.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*||||||||||||||||||*|* targets:1176   UAAAACGAUGUGACAGAAAAGAUC   1199 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075117L09, full insert sequence	NA	coding protein	psRNATarget
AK240812.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*||||||||||||*|||||||* targets:1179   UAAAACGAUGUGACAAAAAAGUUA   1202 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065007C20, full insert sequence	NA	coding protein	psRNATarget
CT835964.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   ||*||||||||||||*|||||||* targets:1207   UAAAACGAUGUGACAAAAAAGUUA   1230 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114I05, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   *||=*=|||||||=|||||||||| targets:3451   CAGGUUGAUGUGAUAGAAAAGUUG   3474 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
AK068281.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||*|||||||=||||||||| targets:1280   UGAAACAAUGUGACGGAAAAGUUG   1303 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013146J12, full insert sequence	NA	coding protein	psRNATarget
XM_015771611.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=*|||*|||||||=||||||||| targets:1435   UGAAACAAUGUGACGGAAAAGUUG   1458 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group formin-like protein 16 (LOC4329483), mRNA	formin-like protein 16(LOC4329483)	coding protein	psRNATarget
AK289062.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*|||||*|||=|||||||||| targets:1398   UGGUACGAUAUGAUAGAAAAGUUG   1421 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090093M24, full insert sequence	NA	coding protein	psRNATarget
AK072155.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*|||||*|||=|||||||||| targets:2997   UGGUACGAUAUGAUAGAAAAGUUG   3020 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P19, full insert sequence	NA	coding protein	psRNATarget
AK070423.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   |=||-||||||||||*||||||||* targets:3596   UGGAGACGAUGUGACUGAAAAGUUA   3620 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023048O19, full insert sequence	NA	coding protein	psRNATarget
AK119988.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=||||*|||*||||||||||||* targets:610   UGGAACAAUGCGACAGAAAAGUUA   633 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-184-G03, full insert sequence	NA	coding protein	psRNATarget
AK100758.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   |=|*||||||||||*||||||||* targets:2490   UGGUACGAUGUGACUGAAAAGUUA   2513 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023119B01, full insert sequence	NA	coding protein	psRNATarget
XM_015762933.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   ||*|-|=||||||||*||||||||| targets:1336   UAAAGAUGAUGUGACUGAAAAGUUG   1360 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group riboflavin synthase (LOC4352436), transcript variant X1, mRNA	riboflavin synthase(LOC4352436)	coding protein	psRNATarget
XM_015762934.1	ncRNA:24   AUCU-UGCUACACUGUCUUUUCAAC   1   ||*|-|=||||||||*||||||||| targets:1391   UAAAGAUGAUGUGACUGAAAAGUUG   1415 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group riboflavin synthase (LOC4352436), transcript variant X2, mRNA	riboflavin synthase(LOC4352436)	coding protein	psRNATarget
JB164844.1	ncRNA:23   UCUUGCUACACUGUCUUUUCAAC   1   =***=|||||||=|||||||||| targets:1   GUUUUGAUGUGAUAGAAAAGUUG   23 Target Full Sequence	2.5	Sequence 2508 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236513.1	ncRNA:23   UCUUGCUACACUGUCUUUUCAAC   1   =***=|||||||=|||||||||| targets:1   GUUUUGAUGUGAUAGAAAAGUUG   23 Target Full Sequence	2.5	Sequence 2508 from Patent EP2985353	NA	coding protein	psRNATarget
HI404383.1	ncRNA:23   UCUUGCUACACUGUCUUUUCAAC   1   =***=|||||||=|||||||||| targets:1   GUUUUGAUGUGAUAGAAAAGUUG   23 Target Full Sequence	2.5	Sequence 2508 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015773384.1	ncRNA:24   AUCUUGCUACACUGUCUUUUCAAC   1   *****=||||||||=||||||||| targets:1   ACAUUUGAUGUGACGGAAAAGUUG   24 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group type IV inositol polyphosphate 5-phosphatase 11 (LOC4333499), transcript variant X2, mRNA	type IV inositol polyphosphate 5-phosphatase 11(LOC4333499)	coding protein	psRNATarget
XM_015773383.1	ncRNA:19   GCUACACUGUCUUUUCAAC   1   =||||||||=||||||||| targets:1   UGAUGUGACGGAAAAGUUG   19 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group type IV inositol polyphosphate 5-phosphatase 11 (LOC4333499), transcript variant X1, mRNA	type IV inositol polyphosphate 5-phosphatase 11(LOC4333499)	coding protein	psRNATarget