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BaseInfo

ncRNA ID	novel_osa_miR3495
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:1614262-1614458 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	21
Mature sequence(if miRNA)	1 - AUGACGCCGUUAACUUUUUAA - 21
Stem-loop(if miRNA)	--           A       A  C         C ACUC  C     C     U      CAAAUAUAAAAA        UCAUGCUUAAAGAAU       G   AUGACGCCGUU ACUUUUU AC AACGUUUGA C    GU UUAUU AAAAA UUUAUG            UAAUUAUG               AUUUGAU A   ||||||||||| ||||||| || ||||||||| |    || ||||| ||||| ||||||            ||||||||               ||||||| U   UACUGCGGCAA UGAAAAA UG UUGCAAACU G    UA AAUAA UUUUU AAAUAC            AUUAAUAU               UGAACUA A CA           C       A  U         A AAAA  A     A     U      ------------        UAAAUAAAAUAACAC       A
Stem-loop sequence	AUGACGCCGUUAACUUUUUAACCAACGUUUGACCACUCGUCUUAUUCAAAAAUUUUAUGCAAAUAUAAAAAUAAUUAUGUCAUGCUUAAAGAAUAUUUGAUGAUAAAUCAAGUCACAAUAAAAUAAAUUAUAAUUACAUAAAUUUUUUAAAUAAAAUAAAAGAUCAAACGUUUGUAAAAAAGUCAACGGCGUCAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241224.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   ||||||||||||||||||||| targets:933   UUAAAAAGUUAACGGCGUCAU   953 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065124H21, full insert sequence	NA	coding protein	psRNATarget
CT829822.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||||||||=||||* targets:916   UUAAAAAGUUAACGGUGUCAA   936 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B24, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||*||||||||||| targets:852   UUAAAAAGUCAACGGCGUCAU   872 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||||||*||||||| targets:1496   UUAAAAAGUUAACAGCGUCAU   1516 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||||||*||||||| targets:1638   UUAAAAAGUUAACAGCGUCAU   1658 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK066336.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||*||||||||||| targets:1788   UUAAAAAGUCAACGGCGUCAU   1808 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence	NA	coding protein	psRNATarget
XM_015756907.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||*||||||||||| targets:1780   UUAAAAAGUCAACGGCGUCAU   1800 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA	probable inactive beta-glucosidase 33(LOC4347547)	coding protein	psRNATarget
AK100631.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *|=||||||||||||||||=| targets:349   GUGAAAAGUUAACGGCGUCGU   369 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023109E08, full insert sequence	NA	coding protein	psRNATarget
AK069318.1	ncRNA:21   AAU-UUUUCAAUUGCCGCAGUA   1   |||-|||||||||||||||||* targets:3345   UUAGAAAAGUUAACGGCGUCAA   3366 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023014M14, full insert sequence	NA	coding protein	psRNATarget
XM_015789093.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:702   CUAAAAAGUUAACGGUGUCAA   722 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group salt stress-induced protein-like (LOC4326278), mRNA	salt stress-induced protein-like(LOC4326278)	coding protein	psRNATarget
XM_015789878.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:1470   CUAAAAAGUUAACGGUGUCAA   1490 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 5-pentadecatrienyl resorcinol O-methyltransferase (LOC9266155), mRNA	5-pentadecatrienyl resorcinol O-methyltransferase(LOC9266155)	coding protein	psRNATarget
AK064971.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:1588   CUAAAAAGUUAACGGUGUCAA   1608 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001B15, full insert sequence	NA	coding protein	psRNATarget
XM_015794366.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:1755   CUAAAAAGUUAACGGUGUCAA   1775 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pro-resilin (LOC4346336), mRNA	pro-resilin(LOC4346336)	coding protein	psRNATarget
AK287689.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:2650   CUAAAAAGUUAACGGUGUCAA   2670 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065128D10, full insert sequence	NA	coding protein	psRNATarget
AK289092.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||||||||=||||* targets:5638   CUAAAAAGUUAACGGUGUCAA   5658 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget
XM_015757652.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||*||||||||||* targets:1531   UUAAAAAGUCAACGGCGUCAA   1551 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chlorophyllase-2, chloroplastic (LOC4348648), mRNA	chlorophyllase-2, chloroplastic(LOC4348648)	coding protein	psRNATarget
AK066189.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||||*||||||||||* targets:696   UUAAAAAGUCAACGGCGUCAA   716 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013052P16, full insert sequence	NA	coding protein	psRNATarget
AK288474.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||*||||||||||| targets:1177   AUAAAAAGUCAACGGCGUCAU   1197 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090038A02, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||*||||||||||| targets:5206   AUAAAAAGUCAACGGCGUCAU   5226 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget
CT835080.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*|||||||*||||||||||| targets:1147   UCAAAAAGUCAACGGCGUCAU   1167 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*|||||||*||||||||||| targets:1457   UCAAAAAGUCAACGGCGUCAU   1477 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*|||||||*||||||||||| targets:1457   UCAAAAAGUCAACGGCGUCAU   1477 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288703.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*|||||||*||||||||||| targets:3220   UCAAAAAGUCAACGGCGUCAU   3240 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
AK289044.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |||||||*|*||||||||||| targets:612   UUAAAAAAUCAACGGCGUCAU   632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092F18, full insert sequence	NA	coding protein	psRNATarget
CT832797.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:779   AGAAAAAGUCAACGGCGUCAU   799 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008N07, full insert sequence	NA	coding protein	psRNATarget
AK065779.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:987   AGAAAAAGUCAACGGCGUCAU   1007 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039E23, full insert sequence	NA	coding protein	psRNATarget
AK068336.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:1060   AGAAAAAGUCAACGGCGUCAU   1080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013149H05, full insert sequence	NA	coding protein	psRNATarget
XM_015795035.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:1235   AGAAAAAGUCAACGGCGUCAU   1255 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 10 (LOC4325933), transcript variant X1, mRNA	calcineurin B-like protein 10(LOC4325933)	coding protein	psRNATarget
AK100009.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:814   ACAAAAAGUCAACGGCGUCAU   834 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015775808.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||*||||||||||* targets:33   CUAAAAAGUCAACGGCGUCAA   53 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein 8 (LOC4332064), mRNA	zinc finger protein 8(LOC4332064)	coding protein	psRNATarget
XM_015766756.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:2000   AGAAAAAGUCAACGGCGUCAU   2020 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable glucuronosyltransferase Os01g0926600 (LOC4327242), mRNA	probable glucuronosyltransferase Os01g0926600(LOC4327242)	coding protein	psRNATarget
AK288827.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:1412   AGAAAAAGUCAACGGCGUCAU   1432 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090073J08, full insert sequence	NA	coding protein	psRNATarget
AK289053.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:784   AGAAAAAGUCAACGGCGUCAU   804 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090092P21, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:2834   ACAAAAAGUCAACGGCGUCAU   2854 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
XM_015790302.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||*||||||||||* targets:70   CUAAAAAGUCAACGGCGUCAA   90 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group flavin-containing monooxygenase FMO GS-OX-like 8 (LOC4342236), mRNA	flavin-containing monooxygenase FMO GS-OX-like 8(LOC4342236)	coding protein	psRNATarget
AK288309.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:1052   AGAAAAAGUCAACGGCGUCAU   1072 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020H08, full insert sequence	NA	coding protein	psRNATarget
XM_015762743.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||||*||||||||||| targets:57   AGAAAAAGUCAACGGCGUCAU   77 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 1 (LOC107276851), mRNA	putative disease resistance RPP13-like protein 1(LOC107276851)	coding protein	psRNATarget
AK288782.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   *||||||||*||||||||||* targets:1231   AUAAAAAGUCAACGGCGUCAA   1251 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069D21, full insert sequence	NA	coding protein	psRNATarget
XM_015792366.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*=||||||*||||||||||| targets:859   UCGAAAAGUCAACGGCGUCAU   879 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*=||||||*||||||||||| targets:867   UCGAAAAGUCAACGGCGUCAU   887 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*=||||||*||||||||||| targets:1273   UCGAAAAGUCAACGGCGUCAU   1293 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
AK289157.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||*|||||||=||||| targets:513   AAAAAAAAUUAACGGUGUCAU   533 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099P09, full insert sequence	NA	coding protein	psRNATarget
AK288429.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   **|||||*|||||||=||||| targets:3459   ACAAAAAUUUAACGGUGUCAU   3479 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
XM_015763290.1	ncRNA:21   AAUUUUUCAAUUGCCGCAGUA   1   |*|||*|||*||||||||||| targets:1287   UCAAACAGUCAACGGCGUCAU   1307 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein YnbD-like (LOC107279577), transcript variant X3, mRNA	uncharacterized protein YnbD-like(LOC107279577)	coding protein	psRNATarget