Search result

BaseInfo

ncRNA ID	novel_osa_miR3493
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:30242019-30242087 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	21
Mature sequence(if miRNA)	1 - UAAGUCAUUCUAGCAUCUUUC - 21
Stem-loop(if miRNA)	--                C   ---------C     CA   UAAGUCAUUCUAGCAU UUU          ACAUU  U   |||||||||||||||| |||          |||||   AUUCAGUAAGAUCGUA AAA          UGUAG  A AC                U   UCUAAAUAAU     UU
Stem-loop sequence	UAAGUCAUUCUAGCAUCUUUCACAUUCAUAUUGAUGUUAAUAAAUCUAAAUAUGCUAGAAUGACUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835159.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:295   GAAAAAUGCUAGAAUGACUUA   315 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence	NA	coding protein	psRNATarget
AK066216.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:1122   GAAAAAUGCUAGAAUGACUUA   1142 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence	NA	coding protein	psRNATarget
CT832810.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:1121   GAAAAAUGCUAGAAUGACUUA   1141 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence	NA	coding protein	psRNATarget
XM_015777391.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:1374   GAAAAAUGCUAGAAUGACUUA   1394 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA	uncharacterized LOC4333864(LOC4333864)	coding protein	psRNATarget
AK099623.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:174   GAAAAAUGCUAGAAUGACUUA   194 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:2204   GAAAAAUGCUAGAAUGACUUA   2224 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
AK109758.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:1733   GAAAAAUGCUAGAAUGACUUA   1753 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence	NA	coding protein	psRNATarget
AK288952.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:319   GAAAAAUGCUAGAAUGACUUA   339 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence	NA	coding protein	psRNATarget
XM_015761673.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:5719   GAAAAAUGCUAGAAUGACUUA   5739 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761673.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||=|||||||||||| targets:5841   GAAAAAUGUUAGAAUGACUUA   5861 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761672.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||||||||||||||| targets:5723   GAAAAAUGCUAGAAUGACUUA   5743 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761672.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||=|||||||||||| targets:5845   GAAAAAUGUUAGAAUGACUUA   5865 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA	regulatory-associated protein of TOR 2(LOC9266997)	coding protein	psRNATarget
XM_015761241.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*=||||||||||||||| targets:887   GAAAAGUGCUAGAAUGACUUA   907 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group dirigent protein 1 (LOC4350074), mRNA	dirigent protein 1(LOC4350074)	coding protein	psRNATarget
XM_015790275.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:1796   GAGAAAUGCUAGAAUGACUUA   1816 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X2, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015790274.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:2045   GAGAAAUGCUAGAAUGACUUA   2065 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X1, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015779938.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:977   GAGAAAUGCUAGAAUGACUUA   997 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
XM_015779937.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:1069   GAGAAAUGCUAGAAUGACUUA   1089 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
AK288214.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:2699   GAGAAAUGCUAGAAUGACUUA   2719 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence	NA	coding protein	psRNATarget
AK289050.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*|||=|||||||||||| targets:2934   GAAAAAUGUUAGAAUGACUUA   2954 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092O13, full insert sequence	NA	coding protein	psRNATarget
AK288568.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||=|*|||||||||||||||| targets:2870   GAGAAAUGCUAGAAUGACUUA   2890 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence	NA	coding protein	psRNATarget
AK240884.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   *|||*|||||||||||||||| targets:507   AAAAAAUGCUAGAAUGACUUA   527 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence	NA	coding protein	psRNATarget
XM_015764394.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   |==|*|||||||||||||||| targets:1363   GGGAUAUGCUAGAAUGACUUA   1383 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA	vesicle-associated membrane protein 721(LOC4352920)	coding protein	psRNATarget
XM_015789026.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   *|=|*|||||||||||||||| targets:977   UAGAAAUGCUAGAAUGACUUA   997 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group germin-like protein 1-4 (LOC4325744), mRNA	germin-like protein 1-4(LOC4325744)	coding protein	psRNATarget
CT837577.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*||||||*||||||||| targets:293   GAAAAAUGCUAAAAUGACUUA   313 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence	NA	coding protein	psRNATarget
XM_015783671.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*||||||||||*||||| targets:1073   GAAAAAUGCUAGAAUAACUUA   1093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA	uncharacterized LOC4339170(LOC4339170)	coding protein	psRNATarget
AK105572.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*||*||||||||||||| targets:645   GAAAAAUACUAGAAUGACUUA   665 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-128-D03, full insert sequence	NA	coding protein	psRNATarget
XM_015773673.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*||*||||||||||||| targets:1831   GAAAAAUACUAGAAUGACUUA   1851 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA	cytochrome P450 78A5(LOC4333404)	coding protein	psRNATarget
XM_015763581.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ||||*||||||*||||||||| targets:1766   GAAAAAUGCUACAAUGACUUA   1786 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group benzyl alcohol O-benzoyltransferase-like (LOC107276754), mRNA	benzyl alcohol O-benzoyltransferase-like(LOC107276754)	coding protein	psRNATarget
CT831709.1	ncRNA:21   CUUUCUACGAUCUUACUGAAU   1   ***|*|||||||||||||||| targets:1158   CCCACAUGCUAGAAUGACUUA   1178 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128P05, full insert sequence	NA	coding protein	psRNATarget