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BaseInfo

ncRNA ID novel_osa_miR3489
Species Oryza sativa
Class miRNA
Genome position Chr2:7275477-7275556 [+]
Reference genome IRGSP-1.0
Source SRR2040390
Length 21
Mature sequence(if miRNA) 1 - CUCUAGUUUAACUAAAUGAAC - 21
Stem-loop(if miRNA) --      U       A   A   AU    UG       G
  CUCUAG UUAACUA AUG ACU  AUUU  CUUUUGA A
  |||||| ||||||| ||| |||  ||||  |||||||
  GAGAUC AGUUGAU UAC UGA  UAAA  GAAAAUU U
GU      C       C   C   AU    GU       U
Stem-loop sequence CUCUAGUUUAACUAAAUGAACUAUAUUUUGCUUUUGAGAUUUUAAAAGUGAAAUUAAGUCCAUCUAGUUGACCUAGAGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK102434.1
ncRNA:21   CAAGUAAAUCAAUUUGAUCUC   1
  *|*||*||||||||||||||*
targets:1402   CUGCAGUUAGUUAAACUAGAC   1422

3.0 Oryza sativa Japonica Group cDNA clone:J033093J01, full insert sequence NA coding protein psRNATarget