Search result

BaseInfo

ncRNA ID	novel_osa_miR3487
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28456101-28456247 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2098560;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - ACACAGAUUGUGUGUAAAUUGCGA - 24
Stem-loop(if miRNA)	AC     -- UG G                   CUUUU           CACAAUGAU       -   GG   U   ACAGA  U  U UGUAAAUUGCGAGAUGAAU     AAGCCUAAUUG         UUGACAA UGU  UGC A   |||||  |  | |||||||||||||||||||     |||||||||||         ||||||| |||  |||   UGUCU  G  A ACAUUUGGCGCUCUGCUUA     UUCGGAUUAAU         AAUUGUU ACA  AUG C AA     UA GU G                   AAUAC           -UAGGCAGU       U   -A   A
Stem-loop sequence	ACACAGAUUGUGUGUAAAUUGCGAGAUGAAUCUUUUAAGCCUAAUUGCACAAUGAUUUGACAAUGUGGUGCUACAGUAAACAUUUGUUAAUGACGGAUUAAUUAGGCUUCAUAAAUUCGUCUCGCGGUUUACAGAUGGAUUCUGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287702.1	ncRNA:24   AGCGUUAAAUGUGUGUUAGACACA   1   |||||||||||||||||||||||| targets:1375   UCGCAAUUUACACACAAUCUGUGU   1398 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   AGCGUUAAAUGUGUGUUAGACACA   1   |||=|||||||||||||||||||| targets:1818   UCGUAAUUUACACACAAUCUGUGU   1841 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK072341.1	ncRNA:24   AGCGUUAAAUGUGUGUUAGACACA   1   |||=|||||||||=|||||||||| targets:2407   UCGUAAUUUACACGCAAUCUGUGU   2430 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK288806.1	ncRNA:24   AGCGUUAAAUGUGUGUUAGACACA   1   |||=|||||||||=|||||||||| targets:1432   UCGUAAUUUACACGCAAUCUGUGU   1455 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence	NA	coding protein	psRNATarget
AK107289.1	ncRNA:24   AG--CGUUAAAUGUGUGUUAGACACA   1   ||--|||||||||||=|||||||||| targets:2079   UCUAGCAAUUUACACGCAAUCUGUGU   2104 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence	NA	coding protein	psRNATarget
CT837736.1	ncRNA:24   AGCGUUAAAUGUGUGUUAGACACA   1   ||*|||||||||||||||||||*| targets:176   UCACAAUUUACACACAAUCUGUAU   199 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M17, full insert sequence	NA	coding protein	psRNATarget