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BaseInfo

ncRNA ID	novel_osa_miR3486
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:29509786-29509968 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390;SRR2040401;SRR2040407;SRR1460506;SRR1460507
Length	24
Mature sequence(if miRNA)	160 - AAACGUUGUAAGUAAAAACUUAAA - 183
Stem-loop(if miRNA)	--                                          A      GAAAUUAUUAUUUAUUUUAU  GUGACUUACUUUAUUAUCUACAGCACU   UAAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAU UUUUUU                    UU                           U   |||||||||||||||||||||||||||||||||||||||||| ||||||                    ||   AUUCAAAAAUGAAUGUUGCAAAUUGGUGAGCAGAAUAAGUUA AAAAAA                    CG                           U AA                                          A      -----------------AAA  UUUAUAUUUUUCGCUUUUCAACACGAA
Stem-loop sequence	UAAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAUAUUUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCUACAGCACUUUAAGCACAACUUUUCGCUUUUUAUAUUUGCAAAAAAAAAAAUUGAAUAAGACGAGUGGUUAAACGUUGUAAGUAAAAACUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAAUUCAAAAAUGAAUGUUGCAAA   1   |||=|||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAAUUCAAAAAUGAAUGUUGCAAA   1   |||=|||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAAUUCAAAAAUGAAUGUUGCAAA   1   |||=|||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAAUUCAAAAAUGAAUGUUGCAAA   1   |||=|*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget