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BaseInfo

ncRNA ID novel_osa_miR3485
Species Oryza sativa
Class miRNA
Genome position Chr2:28662158-28662245 [+]
Reference genome IRGSP-1.0
Source SRR2040390
Length 24
Mature sequence(if miRNA) 65 - AUCAAUAUGAAUAUAGAAAAUGCU - 88
Stem-loop(if miRNA) --     C C CG            C  A          CAUAU
  CAUUU C A  UUUAUAUUGAUG UA UGAAUCUAGA     A
  ||||| | |  |||||||||||| || ||||||||||
  GUAAA G U  AAGUAUAACUAC AU ACUUAGAUCU     U
UC     A A AU            A  C          AUCUA
Stem-loop sequence CAUUUCCCACGUUUAUAUUGAUGCUAAUGAAUCUAGACAUAUAUAUCUAUCUAGAUUCACUAACAUCAAUAUGAAUAUAGAAAAUGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT831438.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||=|||||=|||||||||||||||
targets:740   AGUAUUUUUUAUAUUCAUAUUGAU   763

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I07, full insert sequence NA coding protein psRNATarget
CT831438.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ***||||||||||||=||||||||
targets:765   UUAAUUUUCUAUAUUUAUAUUGAU   788

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I07, full insert sequence NA coding protein psRNATarget
XM_015756761.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|||||=||||||||
targets:3360   AGCAUUUUCCAUAUUUAUAUUGAU   3383

2.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
XM_015777143.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||||||||||=||||||||
targets:1914   AUCAUUUUCUAUAUUUAUAUUGAU   1937

1.5 PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA lecithin-cholesterol acyltransferase-like 1(LOC4333995) coding protein psRNATarget
AK071679.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||||||||||=||||||||
targets:1798   AUCAUUUUCUAUAUUUAUAUUGAU   1821

1.5 Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence NA coding protein psRNATarget
XM_015774602.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=*||||||||||||||
targets:1017   AGCAUUUUUCAUAUUCAUAUUGAU   1040

2.0 PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA protein app1(LOC4334321) coding protein psRNATarget
CT832752.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=*||||||||||||||
targets:954   AGCAUUUUUCAUAUUCAUAUUGAU   977

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence NA coding protein psRNATarget
XM_015763560.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=||||||||*||||||
targets:993   AGCAUUUUUUAUAUUCACAUUGAU   1016

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA uncharacterized LOC107278415(LOC107278415) coding protein psRNATarget
AK069119.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=*||||||||||||||
targets:986   AGCAUUUUUCAUAUUCAUAUUGAU   1009

2.0 Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence NA coding protein psRNATarget
CT834553.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=*||||||||||||||
targets:890   AGCAUUUUUCAUAUUCAUAUUGAU   913

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence NA coding protein psRNATarget
XM_015779859.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|||||=||||||||
targets:935   AGCAUUUUCCAUAUUUAUAUUGAU   958

2.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget
CT837577.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||||||||=*||||||||||||||
targets:213   AGCAUUUUUCAUAUUCAUAUUGAU   236

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:4726   AGCAUUUUCCACAUUCAUAUUGAU   4749

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
XM_015789040.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ***||||||*|*||||||||||||
targets:4764   UUGAUUUUCCACAUUCAUAUUGAU   4787

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK121342.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:4560   AGCAUUUUCCACAUUCAUAUUGAU   4583

2.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
AK121342.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ***||||||*|*||||||||||||
targets:4598   UUGAUUUUCCACAUUCAUAUUGAU   4621

2.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
AK241705.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||*|||||||||||||*||
targets:3989   AGCAUUUCCUAUAUUCAUAUUAAU   4012

2.5 Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence NA coding protein psRNATarget
XM_015758389.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||*||||||||||||||||
targets:2135   AUCAUUUCCUAUAUUCAUAUUGAU   2158

1.0 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC107276819) coding protein psRNATarget
XM_015778179.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1637   AGCAUUUUCCACAUUCAUAUUGAU   1660

2.5 PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA methylthioribose kinase 2(LOC107276080) coding protein psRNATarget
XM_015767363.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1730   AGCAUUUUCCACAUUCAUAUUGAU   1753

2.5 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
AK102210.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1634   AGCAUUUUCCACAUUCAUAUUGAU   1657

2.5 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
AK099623.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||*|*||||||||||||||
targets:94   AGCAUUUCCCAUAUUCAUAUUGAU   117

2.0 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
XM_015777391.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1294   AGCAUUUUCCACAUUCAUAUUGAU   1317

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA uncharacterized LOC4333864(LOC4333864) coding protein psRNATarget
XM_015764394.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1309   AGCAUUUUCCACAUUCAUAUUGAU   1332

2.5 PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA vesicle-associated membrane protein 721(LOC4352920) coding protein psRNATarget
AK060498.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1269   AGCAUUUUCCACAUUCAUAUUGAU   1292

2.5 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
CT832810.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1041   AGCAUUUUCCACAUUCAUAUUGAU   1064

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence NA coding protein psRNATarget
AK066216.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1044   AGCAUUUUCCACAUUCAUAUUGAU   1067

2.5 Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence NA coding protein psRNATarget
CT833662.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |||||||||*|*||||||||||||
targets:1041   AGCAUUUUCCACAUUCAUAUUGAU   1064

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
XM_015793334.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*||||||=*||||||||||||||
targets:1742   AACAUUUUUCAUAUUCAUAUUGAU   1765

2.0 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793335.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*||||||=*||||||||||||||
targets:1724   AACAUUUUUCAUAUUCAUAUUGAU   1747

2.0 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793336.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*||||||=*||||||||||||||
targets:1571   AACAUUUUUCAUAUUCAUAUUGAU   1594

2.0 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015778310.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*=||||*||||||||||||||||
targets:2124   AUUAUUUCCUAUAUUCAUAUUGAU   2147

1.0 PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA gamma-glutamyltranspeptidase 1(LOC4336033) coding protein psRNATarget
XM_015788194.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||*|||||||=||||||||
targets:1767   ACCAUUUCCUAUAUUUAUAUUGAU   1790

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X1, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788196.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||*|||||||=||||||||
targets:1748   ACCAUUUCCUAUAUUUAUAUUGAU   1771

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X3, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
XM_015788195.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  |*|||||*|||||||=||||||||
targets:1737   ACCAUUUCCUAUAUUUAUAUUGAU   1760

2.5 PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X2, mRNA embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015) coding protein psRNATarget
CT835025.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||=||||||*|*||||||||||||
targets:227   AGUAUUUUCCACAUUCAUAUUGAU   250

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence NA coding protein psRNATarget
AK102104.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||=||||*|*=|||||||||||||
targets:650   AGUAUUUCCCGUAUUCAUAUUGAU   673

3.0 Oryza sativa Japonica Group cDNA clone:J033084B10, full insert sequence NA coding protein psRNATarget
AK067404.1
ncRNA:24   UCGUAAAAGAUAUAAGUAUAACUA   1
  ||=||||*|*=|||||||||||||
targets:648   AGUAUUUCCCGUAUUCAUAUUGAU   671

3.0 Oryza sativa Japonica Group cDNA clone:J013106F19, full insert sequence NA coding protein psRNATarget
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