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BaseInfo

ncRNA ID novel_osa_miR3481
Species Oryza sativa
Class miRNA
Genome position Chr10:15995749-15995814 [+]
Reference genome IRGSP-1.0
Source SRR2040390
Length 24
Mature sequence(if miRNA) 43 - AUGGCUAAUCAUGGAUUAAUUAGG - 66
Stem-loop(if miRNA) --       C    C      A    UGG    
  UAAUUAA CCGU AUUAGC CAUG   GUUAU
  ||||||| |||| |||||| ||||   ||||U
  AUUAAUU GGUA UAAUCG GUAU   CGAUG
GG       A    C      -    UUA    
Stem-loop sequence UAAUUAACCCGUCAUUAGCACAUGUGGGUUAUUGUAGCAUUUAUGGCUAAUCAUGGAUUAAUUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK071825.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|||||||||||||||
targets:1333   CCUAAUUAGUCCAUGAUUAGCCAU   1356

1.0 Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence NA coding protein psRNATarget
AK064090.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|||||||||||||||
targets:1275   CCUAAUUAGUCCAUGAUUAGCCAU   1298

1.0 Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence NA coding protein psRNATarget
CT831729.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|||||||||||||||
targets:390   CCUAAUUAGUCCAUGAUUAGCCAU   413

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence NA coding protein psRNATarget
AK289081.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|=|||||||||||||
targets:1315   CCUAAUUAGUUCAUGAUUAGCCAU   1338

2.0 Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence NA coding protein psRNATarget
AK063539.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|=|||||||||||||
targets:2038   CCUAAUUAGUUCAUGAUUAGCCAU   2061

2.0 Oryza sativa Japonica Group cDNA clone:001-117-C04, full insert sequence NA coding protein psRNATarget
AK288167.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||=|||=|||||||||||
targets:1185   CCUAAUUAGUCCGUGAUUAGCCAU   1208

2.5 Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence NA coding protein psRNATarget
CT834429.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:1380   CCUAAUUAAUCCAUGAUUAGCCUAU   1404

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence NA coding protein psRNATarget
AK288638.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:317   CCUAAUUAAUCCAUGAUUAGCCUAU   341

3.0 Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence NA coding protein psRNATarget
AK288576.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:1019   CCUAAUUAAUCCAUGAUUAGCCUAU   1043

3.0 Oryza sativa Japonica Group cDNA, clone: J090049B14, full insert sequence NA coding protein psRNATarget
LQ236475.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:115   CCUAAUUAAUCCAUGAUUAGCCCAU   139

3.0 Sequence 2470 from Patent EP2985353 NA coding protein psRNATarget
HI404345.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:115   CCUAAUUAAUCCAUGAUUAGCCCAU   139

3.0 Sequence 2470 from Patent EP2074227 NA coding protein psRNATarget
JB164806.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:115   CCUAAUUAAUCCAUGAUUAGCCCAU   139

3.0 Sequence 2470 from Patent EP2559767 NA coding protein psRNATarget
HI404232.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:112   CCUAAUUAAUCCAUGAUUAGCCUAU   136

3.0 Sequence 2357 from Patent EP2074227 NA coding protein psRNATarget
JB164693.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:112   CCUAAUUAAUCCAUGAUUAGCCUAU   136

3.0 Sequence 2357 from Patent EP2559767 NA coding protein psRNATarget
LQ236362.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  ||||||||||||||||||||||-||
targets:112   CCUAAUUAAUCCAUGAUUAGCCUAU   136

3.0 Sequence 2357 from Patent EP2985353 NA coding protein psRNATarget
AK072891.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  *|||||||=|||||||||||||||
targets:890   ACUAAUUAGUCCAUGAUUAGCCAU   913

1.0 Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence NA coding protein psRNATarget
AK241212.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  =|||||||||||||||||||||-||
targets:490   UCUAAUUAAUCCAUGAUUAGCCUAU   514

3.0 Oryza sativa Japonica Group cDNA, clone: J065122M15, full insert sequence NA coding protein psRNATarget
CT833487.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  =|||||||||||||||||||||-||
targets:842   UCUAAUUAAUCCAUGAUUAGCCUAU   866

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence NA coding protein psRNATarget
CT830949.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  =|||||||||||||||||||||-||
targets:836   UCUAAUUAAUCCAUGAUUAGCCUAU   860

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI219H14, full insert sequence NA coding protein psRNATarget
CT831158.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGG-UA   1
  =|||||||||||||||||||||-||
targets:655   UCUAAUUAAUCCAUGAUUAGCCUAU   679

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence NA coding protein psRNATarget
XM_015775655.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  |||||*||=|||||||||||||||
targets:1873   CCUAACUAGUCCAUGAUUAGCCAU   1896

2.0 PREDICTED: Oryza sativa Japonica Group 4-hydroxyphenylacetaldehyde oxime monooxygenase (LOC4334792), mRNA 4-hydroxyphenylacetaldehyde oxime monooxygenase(LOC4334792) coding protein psRNATarget
AK288192.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  |*||||||=||||||||||||=||
targets:2199   CAUAAUUAGUCCAUGAUUAGCUAU   2222

2.5 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
AK288308.1
ncRNA:24   GGAUUAAUUAGGUACUAAUCGGUA   1
  ||||||||*|*|||||||||||||
targets:397   CCUAAUUAUUACAUGAUUAGCCAU   420

2.0 Oryza sativa Japonica Group cDNA, clone: J090020H07, full insert sequence NA coding protein psRNATarget
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