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BaseInfo

ncRNA ID	novel_osa_miR3479
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:15171957-15172165 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555751;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - ACAAGAUAGAUCAAUAUGUAACAU - 24
Stem-loop(if miRNA)	--                                                                    A                CAA    -C    -   U   ACAAGAUAGAUCAAUAUGUAACAUAUCACUCCGCAAACAUGCAAGUUCAAAUUCAACUUUUACAAGUU UAACAAAAAUAACAAA   AACU  AAAU UAC A   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||  |||| ||| U   UGUUCUAUCUAGUUAUACAUUGUAUAGUGAGGUGUUUGUACGUUCAAGUUUAAGUUGAAGAUGUUCAA AUUGUUUUUAUUGUUU   UUGA  UUUA AUG A AC                                                                    C                AAA    CA    U   U
Stem-loop sequence	ACAAGAUAGAUCAAUAUGUAACAUAUCACUCCGCAAACAUGCAAGUUCAAAUUCAACUUUUACAAGUUAUAACAAAAAUAACAAACAAAACUCAAAUUACUAUAUGUAUAUUUACAGUUAAAUUUGUUAUUUUUGUUACAACUUGUAGAAGUUGAAUUUGAACUUGCAUGUUUGUGGAGUGAUAUGUUACAUAUUGAUCUAUCUUGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107061.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   ||*|*|=||||||||||||||||* targets:937   AUAUCAUAUAUUGAUCUAUCUUGA   960 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-121-E01, full insert sequence	NA	coding protein	psRNATarget
AK120309.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   ||*|*|||||||||||||||||*| targets:6289   AUAUCACAUAUUGAUCUAUCUUAU   6312 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013055D13, full insert sequence	NA	coding protein	psRNATarget
AK107231.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   ||*|*|=||||||||||||||||* targets:1382   AUAUCAUAUAUUGAUCUAUCUUGA   1405 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-125-E04, full insert sequence	NA	coding protein	psRNATarget
CT834888.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   ||*|*|=||||||||||||||||* targets:508   AUAUCAUAUAUUGAUCUAUCUUGA   531 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103P09, full insert sequence	NA	coding protein	psRNATarget
HI403551.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   *|*|||=|||||*||||||||||| targets:231   UUAUUAUAUAUUAAUCUAUCUUGU   254 Target Full Sequence	2.5	Sequence 1676 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235681.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   *|*|||=|||||*||||||||||| targets:231   UUAUUAUAUAUUAAUCUAUCUUGU   254 Target Full Sequence	2.5	Sequence 1676 from Patent EP2985353	NA	coding protein	psRNATarget
JB164012.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   *|*|||=|||||*||||||||||| targets:231   UUAUUAUAUAUUAAUCUAUCUUGU   254 Target Full Sequence	2.5	Sequence 1676 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015759844.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   |***|=|||=|||||||||||||* targets:1429   ACCAUGCAUGUUGAUCUAUCUUGA   1452 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC9266389), mRNA	disease resistance protein RPM1(LOC9266389)	coding protein	psRNATarget
AK241540.1	ncRNA:24   UACAAUGUAUAACUAGAUAGAACA   1   |***|=|||=|||||||||||||* targets:1190   ACCAUGCAUGUUGAUCUAUCUUGA   1213 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065175H19, full insert sequence	NA	coding protein	psRNATarget