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BaseInfo

ncRNA ID	novel_osa_miR3477
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:6992523-6992692 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390;SRR2040403;SRR3123651;SRR1738240
Length	21
Mature sequence(if miRNA)	1 - UUUCUUGACAAACGUUUGACC - 21
Stem-loop(if miRNA)	-   CU    AAAC        U                AA     A   U     -UU     -UA     A     UUUAU     UUU  UGAC    GUUUGACC UUCGUCUUAUUCAAAA  UUUAU UAA UAUAA   UAUUU   UUAUG CUUGA     CAUC  |||  ||||    |||||||| ||||||||||||||||  ||||| ||| |||||   |||||   ||||| |||||     |||A  GAA  AUUG    CAAACUGG GAGCAGAAUAAGUUUU  AAAUA GUU AUAUU   AUGAA   AGUAU GAAUU     GUAA U   AU    GUUA        U                AA     C   U     UUU     UAC     -     -UCUU
Stem-loop sequence	UUUCUUGACAAACGUUUGACCUUUCGUCUUAUUCAAAAAAUUUAUAUAAUUAUAAUUUAUUUUAUUAUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGUAUGACAUAAGUAUUUUUAUAUUUGCAUAAAAAUUUUGAAUAAGACGAGUGGUCAAACAUUGGUUAUAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241274.1	ncRNA:21   CCAGUUUGCAAACAGUUCUUU   1   *||||||=||||||||=|||| targets:547   UGUCAAAUGUUUGUCAGGAAA   567 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065134F04, full insert sequence	NA	coding protein	psRNATarget
XM_015795482.1	ncRNA:21   CCAGUUUGCAAACAGUUCUUU   1   *||||||=||||||||=|||| targets:549   UGUCAAAUGUUUGUCAGGAAA   569 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group C2 and GRAM domain-containing protein At1g03370 (LOC4345911), transcript variant X2, mRNA	C2 and GRAM domain-containing protein At1g03370(LOC4345911)	coding protein	psRNATarget
XM_015795481.1	ncRNA:21   CCAGUUUGCAAACAGUUCUUU   1   *||||||=||||||||=|||| targets:1268   UGUCAAAUGUUUGUCAGGAAA   1288 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group C2 and GRAM domain-containing protein At1g03370 (LOC4345911), transcript variant X1, mRNA	C2 and GRAM domain-containing protein At1g03370(LOC4345911)	coding protein	psRNATarget
AK289005.1	ncRNA:21   CCAGUUUGCAAACAGUUCUUU   1   ***=|||*||||||||||||| targets:1449   UACUAAAAGUUUGUCAAGAAA   1469 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090088O08, full insert sequence	NA	coding protein	psRNATarget