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BaseInfo

ncRNA ID novel_osa_miR3476
Species Oryza sativa
Class miRNA
Genome position Chr11:27811770-27811900 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 108 - AGAAGUUGAAUUUGAUCUUGCAUG - 131
Stem-loop(if miRNA) --      UUA                    U                 A     -GC    -  AC
  UGCAAG   AAAUUUAACUUCUGCAAGUU UAACAAAAAUAACAAAU UAGAU   AAAU GU  G
  ||||||   |||||||||||||||||||| ||||||||||||||||| |||||   |||| ||
  ACGUUC   UUUAAGUUGAAGAUGUUCAA GUUGUUUUUAUUGUUUA AUUUA   UUUA CA  A
GU      UAG                    C                 -     ACU    U  AU
Stem-loop sequence UGCAAGUUAAAAUUUAACUUCUGCAAGUUUUAACAAAAAUAACAAAUAUAGAUGCAAAUGUACGAUAACUAUUUUCAAUUUAAUUUGUUAUUUUUGUUGCAACUUGUAGAAGUUGAAUUUGAUCUUGCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK241681.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  =|||||||||||||||||||||||
targets:1000   UAUGCAAGAUCAAAUUCAACUUCU   1023

0.0 Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence NA coding protein psRNATarget
LQ235681.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  =|||||||=|||||||=|||||||
targets:94   UAUGCAAGGUCAAAUUUAACUUCU   117

2.5 Sequence 1676 from Patent EP2985353 NA coding protein psRNATarget
HI403551.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  =|||||||=|||||||=|||||||
targets:94   UAUGCAAGGUCAAAUUUAACUUCU   117

2.5 Sequence 1676 from Patent EP2074227 NA coding protein psRNATarget
JB164012.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  =|||||||=|||||||=|||||||
targets:94   UAUGCAAGGUCAAAUUUAACUUCU   117

2.5 Sequence 1676 from Patent EP2559767 NA coding protein psRNATarget
AK067102.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  =|||||||=|||||||=|||||||
targets:465   UAUGCAAGGUCAAAUUUAACUUCU   488

2.5 Oryza sativa Japonica Group cDNA clone:J013095D16, full insert sequence NA coding protein psRNATarget
XM_015762405.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*||||||||||||||*
targets:744   CAUGCAAGUUCAAAUUCAACUUCG   767

2.0 PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA disease resistance RPP13-like protein 4(LOC4327629) coding protein psRNATarget
XM_015762434.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*||||||||||||||*
targets:811   CAUGCAAGUUCAAAUUCAACUUCG   834

2.0 PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA disease resistance RPP13-like protein 4(LOC4327629) coding protein psRNATarget
AK288928.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||=|||*|||||||||=|||||
targets:4303   CAUGUAAGUUCAAAUUCAGCUUCU   4326

2.5 Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence NA coding protein psRNATarget
JB164690.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*|*|||||||||||||
targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43

2.0 Sequence 2354 from Patent EP2559767 NA coding protein psRNATarget
HI404229.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*|*|||||||||||||
targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43

2.0 Sequence 2354 from Patent EP2074227 NA coding protein psRNATarget
LQ236359.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*|*|||||||||||||
targets:20   CAUGCAAGUUGAAAUUCAACUUCU   43

2.0 Sequence 2354 from Patent EP2985353 NA coding protein psRNATarget
XM_015781215.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  ||||||||*|*|||||||||||||
targets:823   CAUGCAAGUUAAAAUUCAACUUCU   846

2.0 PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA putative beta-glucosidase 15(LOC107280799) coding protein psRNATarget
XM_015792915.1
ncRNA:24   GUACGUUCUAGUUUAAGUUGAAGA   1
  |||*||||*|||||||=|||||||
targets:1877   CAUACAAGUUCAAAUUUAACUUCU   1900

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA UDP-glycosyltransferase 89B1(LOC4345896) coding protein psRNATarget
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