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BaseInfo

ncRNA ID	novel_osa_miR3475
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:23687767-23687847 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	24
Mature sequence(if miRNA)	1 - UACCAAAUCGUUUCCGAUUGUUGG - 24
Stem-loop(if miRNA)	--UAC     CG               ----------    A  A      CAAAU  UUUCCGAUUGUUGGA          UCUA CU G      |||||  |||||||||||||||          |||| || A      GUUUA  AAAGGCUAGCAACCU          AGAU GG C CCAUA     AU               AAAUUAUUAC    A  A
Stem-loop sequence	UACCAAAUCGUUUCCGAUUGUUGGAUCUAACUAGACAGGAUAGACAUUAUUAAAUCCAACGAUCGGAAAUAAUUUGAUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778221.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |||||=|||||||||||||||||| targets:3063   CCAACGAUCGGAAACGAUUUGGUA   3086 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |||||=|||||||||||||||||| targets:3114   CCAACGAUCGGAAACGAUUUGGUA   3137 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK288361.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |||||=||=||||||||||||||| targets:2991   CCAACGAUUGGAAACGAUUUGGUA   3014 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence	NA	coding protein	psRNATarget
HI404431.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||=||||||*|||||||| targets:100   CCAACAAUUGGAAACAAUUUGGUA   123 Target Full Sequence	2.5	Sequence 2556 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236561.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||=||||||*|||||||| targets:100   CCAACAAUUGGAAACAAUUUGGUA   123 Target Full Sequence	2.5	Sequence 2556 from Patent EP2985353	NA	coding protein	psRNATarget
JB164892.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||=||||||*|||||||| targets:100   CCAACAAUUGGAAACAAUUUGGUA   123 Target Full Sequence	2.5	Sequence 2556 from Patent EP2559767	NA	coding protein	psRNATarget
AK108234.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |||||=||||||||||||||*||| targets:501   CCAACGAUCGGAAACGAUUUAGUA   524 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
LQ236460.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||||||||||||||*||* targets:56   CCAACAAUCGGAAACGAUUUUGUU   79 Target Full Sequence	2.5	Sequence 2455 from Patent EP2985353	NA	coding protein	psRNATarget
JB164791.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||||||||||||||*||* targets:56   CCAACAAUCGGAAACGAUUUUGUU   79 Target Full Sequence	2.5	Sequence 2455 from Patent EP2559767	NA	coding protein	psRNATarget
HI404330.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ||||||||||||||||||||*||* targets:56   CCAACAAUCGGAAACGAUUUUGUU   79 Target Full Sequence	2.5	Sequence 2455 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015779655.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |||||=|||||||||||||||*|| targets:1558   CCAACGAUCGGAAACGAUUUGAUA   1581 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
XM_015783108.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   |=|||=|||||||||||||||*|| targets:968   CUAACGAUCGGAAACGAUUUGAUA   991 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA	uncharacterized LOC107277789(LOC107277789)	coding protein	psRNATarget
HI404005.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ==*||=|||||||||||||||||| targets:23   UUCACGAUCGGAAACGAUUUGGUA   46 Target Full Sequence	1.0	Sequence 2130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236135.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ==*||=|||||||||||||||||| targets:23   UUCACGAUCGGAAACGAUUUGGUA   46 Target Full Sequence	1.0	Sequence 2130 from Patent EP2985353	NA	coding protein	psRNATarget
JB164466.1	ncRNA:24   GGUUGUUAGCCUUUGCUAAACCAU   1   ==*||=|||||||||||||||||| targets:23   UUCACGAUCGGAAACGAUUUGGUA   46 Target Full Sequence	1.0	Sequence 2130 from Patent EP2559767	NA	coding protein	psRNATarget