Search result

BaseInfo

ncRNA ID novel_osa_miR3474
Species Oryza sativa
Class miRNA
Genome position Chr12:27362227-27362328 [-]
Reference genome IRGSP-1.0
Source SRR2040390
Length 22
Mature sequence(if miRNA) 81 - AUUUUAGCAUUUUUCACAUUCA - 102
Stem-loop(if miRNA) --              C C                 CG        CAUAU
  AUUUUAGCAUUUUU A AUUCAUAUUGAUGUUAA  AAUCUAGA     A
  |||||||||||||| | |||||||||||||||||  ||||||||
  UAAGAUUGUAAAGA U UAAGUAUAACUACAAUU  UUAGAUCU     C
AG              A A                 AU        AUCUA
Stem-loop sequence AUUUUAGCAUUUUUCACAUUCAUAUUGAUGUUAACGAAUCUAGACAUAUACAUCUAUCUAGAUUUAUUAACAUCAAUAUGAAUAUAAGAAAUGUUAGAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT837577.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||||||||||||||||
targets:286   UGAAUGUGAAAAAUGCUAAAAU   307

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:910   UGAAUGUGGAAAAUGCUAAAAU   931

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
XM_015778852.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:11   UGAAUGUGGAAAAUGCUAAAAU   32

1.0 PREDICTED: Oryza sativa Japonica Group transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like (LOC107276663), mRNA transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like(LOC107276663) coding protein psRNATarget
AK287994.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:1547   UGAAUGUGGAAAAUGCUAAAAU   1568

1.0 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:1596   UGAAUGUGGAAAAUGCUAAAAU   1617

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
XM_015793141.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:2002   UGAAUGUGGAAAAUGCUAAAAU   2023

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA uncharacterized LOC4344622(LOC4344622) coding protein psRNATarget
AK120060.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||||||
targets:2154   UGAAUGUGGAAAAUGCUAAAAU   2175

1.0 Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence NA coding protein psRNATarget
XM_015778310.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||||||||||||=|||
targets:2197   UGAAUGUGAAAAAUGCUAGAAU   2218

1.5 PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA gamma-glutamyltranspeptidase 1(LOC4336033) coding protein psRNATarget
CT833491.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:100   UGAAUGUGGAAAAUGCUAGAAU   121

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA011O12, full insert sequence NA coding protein psRNATarget
XM_015783507.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||==||||||||||||
targets:847   UGAAUGUGGGAAAUGCUAAAAU   868

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA ethylene-responsive transcription factor ERF014-like(LOC107277887) coding protein psRNATarget
CT837839.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1013   UGAAUGUGGAAAAUGCUAGAAU   1034

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
CT833662.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1096   UGAAUGUGGAAAAUGCUAGAAU   1117

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
XM_015763560.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1066   UGAAUGUGGAAAAUGCUAGAAU   1087

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278415 (LOC107278415), mRNA uncharacterized LOC107278415(LOC107278415) coding protein psRNATarget
CT837593.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:173   UGAAUGUGGAAAAUGCUAGAAU   194

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122C23, full insert sequence NA coding protein psRNATarget
XM_015768090.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1295   UGAAUGUGGAAAAUGCUAGAAU   1316

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X2, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
XM_015768116.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1404   UGAAUGUGGAAAAUGCUAGAAU   1425

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X5, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
AK071679.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1869   UGAAUGUGGAAAAUGCUAGAAU   1890

2.5 Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence NA coding protein psRNATarget
XM_015777143.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:1985   UGAAUGUGGAAAAUGCUAGAAU   2006

2.5 PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA lecithin-cholesterol acyltransferase-like 1(LOC4333995) coding protein psRNATarget
XM_015768099.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:2591   UGAAUGUGGAAAAUGCUAGAAU   2612

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X3, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
XM_015768108.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||=|||||||||=|||
targets:2748   UGAAUGUGGAAAAUGCUAGAAU   2769

2.5 PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X4, mRNA mediator-associated protein 2(LOC4326241) coding protein psRNATarget
XM_015767758.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||||||==||||||||||||
targets:3833   UGAAUGUGGGAAAUGCUAAAAU   3854

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA transcription factor bHLH68(LOC4325885) coding protein psRNATarget
XM_015761673.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:5712   UGAAUAUGAAAAAUGCUAGAAU   5733

2.5 PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X2, mRNA regulatory-associated protein of TOR 2(LOC9266997) coding protein psRNATarget
XM_015761672.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:5716   UGAAUAUGAAAAAUGCUAGAAU   5737

2.5 PREDICTED: Oryza sativa Japonica Group regulatory-associated protein of TOR 2 (LOC9266997), transcript variant X1, mRNA regulatory-associated protein of TOR 2(LOC9266997) coding protein psRNATarget
AK069916.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  *|||||||=|||||||||=|||
targets:1960   CGAAUGUGGAAAAUGCUAGAAU   1981

2.5 Oryza sativa Japonica Group cDNA clone:J023038C16, full insert sequence NA coding protein psRNATarget
XM_015763894.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  *|||||||=|||||||||=|||
targets:1974   CGAAUGUGGAAAAUGCUAGAAU   1995

2.5 PREDICTED: Oryza sativa Japonica Group ureide permease 2 (LOC4352286), mRNA ureide permease 2(LOC4352286) coding protein psRNATarget
CT835025.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||*|||=|||||||||||||
targets:276   UGAACGUGGAAAAUGCUAAAAU   297

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence NA coding protein psRNATarget
AK071746.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||||||
targets:911   UAAAUGUGGAAAAUGCUAAAAU   932

1.0 Oryza sativa Japonica Group cDNA clone:J023111G24, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||*|||||||||||||=|||
targets:1066   UGAACGUGAAAAAUGCUAGAAU   1087

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
XM_015786593.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||||||
targets:1009   UAAAUGUGGAAAAUGCUAAAAU   1030

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340983 (LOC4340983), mRNA uncharacterized LOC4340983(LOC4340983) coding protein psRNATarget
AK066216.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:1115   UGAAUAUGAAAAAUGCUAGAAU   1136

2.5 Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence NA coding protein psRNATarget
CT832810.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:1114   UGAAUAUGAAAAAUGCUAGAAU   1135

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence NA coding protein psRNATarget
XM_015777391.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:1367   UGAAUAUGAAAAAUGCUAGAAU   1388

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA uncharacterized LOC4333864(LOC4333864) coding protein psRNATarget
AK099623.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:167   UGAAUAUGAAAAAUGCUAGAAU   188

2.5 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
AK109758.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||*||||||||||||=|||
targets:1726   UGAAUAUGAAAAAUGCUAGAAU   1747

2.5 Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence NA coding protein psRNATarget
AK121342.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||||||
targets:4672   UAAAUGUGGAAAAUGCUAAAAU   4693

1.0 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||||||
targets:4838   UAAAUGUGGAAAAUGCUAAAAU   4859

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK242586.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||=|||
targets:573   UAAAUGUGGAAAAUGCUAGAAU   594

2.5 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||=|||
targets:584   UAAAUGUGGAAAAUGCUAGAAU   605

2.5 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
CT837490.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||==||||||||||||
targets:919   UAAAUGUGGGAAAUGCUAAAAU   940

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015758389.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||=|||
targets:2208   UAAAUGUGGAAAAUGCUAGAAU   2229

2.5 PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 8.3-like (LOC107276819), mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC107276819) coding protein psRNATarget
AK070012.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||=|||||||||=|||
targets:2411   UAAAUGUGGAAAAUGCUAGAAU   2432

2.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
XM_015780917.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||==||||||||||||
targets:4762   UAAAUGUGGGAAAUGCUAAAAU   4783

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||==||||||||||||
targets:4811   UAAAUGUGGGAAAUGCUAAAAU   4832

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780916.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*||||||==||||||||||||
targets:4820   UAAAUGUGGGAAAUGCUAAAAU   4841

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
CT835090.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  *||=||||||||||||*|||||
targets:304   AGAGUGUGAAAAAUGCAAAAAU   325

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA009O18, full insert sequence NA coding protein psRNATarget
XM_015777685.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  *||=||||||||||||*|||||
targets:340   AGAGUGUGAAAAAUGCAAAAAU   361

2.5 PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerase I subunit RPA12 (LOC4333888), mRNA DNA-directed RNA polymerase I subunit RPA12(LOC4333888) coding protein psRNATarget
XM_015763581.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  ||||*|||||||||||||*|||
targets:1759   UGAACGUGAAAAAUGCUACAAU   1780

2.5 PREDICTED: Oryza sativa Japonica Group benzyl alcohol O-benzoyltransferase-like (LOC107276754), mRNA benzyl alcohol O-benzoyltransferase-like(LOC107276754) coding protein psRNATarget
CT835159.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*|||*||||||||||||=|||
targets:288   UAAAUAUGAAAAAUGCUAGAAU   309

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence NA coding protein psRNATarget
AK240884.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |*|||||*||||||||||=|||
targets:500   UAAAUGUAAAAAAUGCUAGAAU   521

2.5 Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence NA coding protein psRNATarget
CT834553.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |**|||||==||||||||||||
targets:935   UAUAUGUGGGAAAUGCUAAAAU   956

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence NA coding protein psRNATarget
AK069119.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |**|||||==||||||||||||
targets:1031   UAUAUGUGGGAAAUGCUAAAAU   1052

2.5 Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence NA coding protein psRNATarget
CT832752.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |**|||||==||||||||||||
targets:999   UAUAUGUGGGAAAUGCUAAAAU   1020

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence NA coding protein psRNATarget
XM_015774602.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |**|||||==||||||||||||
targets:1062   UAUAUGUGGGAAAUGCUAAAAU   1083

2.5 PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA protein app1(LOC4334321) coding protein psRNATarget
AK240780.1
ncRNA:22   ACUUACACUUUUUACGAUUUUA   1
  |||||**|=|||||||||||||
targets:983   UGAAUACGGAAAAUGCUAAAAU   1004

3.0 Oryza sativa Japonica Group cDNA, clone: J053075H13, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.