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BaseInfo

ncRNA ID novel_osa_miR3472
Species Oryza sativa
Class miRNA
Genome position Chr12:2563640-2563750 [+]
Reference genome IRGSP-1.0
Source SRR2040390;SRR2040393;SRR2040408
Length 21
Mature sequence(if miRNA) 1 - AAUUCAACUUCUACAGAUUGU - 21
Stem-loop(if miRNA) --       C        A                   CAA    -C    -   U
  AAUUCAA UUCUACAG UUGUAACAAAAAUAACAAA   AACU  AAAU UAC A
  ||||||| |||||||| |||||||||||||||||||   ||||  |||| ||| U
  UUAAGUU AAGAUGUU AACAUUGUUUUUAUUGUUU   UUGA  UUUA AUG A
UU       A        C                   AAA    CA    U   U
Stem-loop sequence AAUUCAACUUCUACAGAUUGUAACAAAAAUAACAAACAAAACUCAAAUUACUAUAUGUAUAUUUACAGUUAAAUUUGUUAUUUUUGUUACAACUUGUAGAAAUUGAAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243002.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  |=||||||||||||||*||||
targets:2544   AUAAUCUGUAGAAGUUAAAUU   2564

1.5 Oryza sativa Japonica Group cDNA, clone: J090096D02, full insert sequence NA coding protein psRNATarget
AK289096.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  |=||||||||||||||*||||
targets:2544   AUAAUCUGUAGAAGUUAAAUU   2564

1.5 Oryza sativa Japonica Group cDNA, clone: J090096D02, full insert sequence NA coding protein psRNATarget
XM_015771705.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:3551   GCAACUUGUAGAAGUUGAAUU   3571

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X14, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771704.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:3570   GCAACUUGUAGAAGUUGAAUU   3590

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X13, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771701.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:3654   GCAACUUGUAGAAGUUGAAUU   3674

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X11, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771702.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:3916   GCAACUUGUAGAAGUUGAAUU   3936

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X12, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771698.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4617   GCAACUUGUAGAAGUUGAAUU   4637

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X8, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771696.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4669   GCAACUUGUAGAAGUUGAAUU   4689

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X6, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771692.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4720   GCAACUUGUAGAAGUUGAAUU   4740

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X2, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771700.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4734   GCAACUUGUAGAAGUUGAAUU   4754

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X10, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771699.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4753   GCAACUUGUAGAAGUUGAAUU   4773

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X9, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771694.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4772   GCAACUUGUAGAAGUUGAAUU   4792

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X4, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771695.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:4963   GCAACUUGUAGAAGUUGAAUU   4983

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X5, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771697.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:5098   GCAACUUGUAGAAGUUGAAUU   5118

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X7, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771691.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:5220   GCAACUUGUAGAAGUUGAAUU   5240

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X1, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771693.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||*=|||||||||||||||
targets:5352   GCAACUUGUAGAAGUUGAAUU   5372

2.0 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X3, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
LQ236483.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  ||=|**|||||||||||||||
targets:120   ACGAAAUGUAGAAGUUGAAUU   140

3.0 Sequence 2478 from Patent EP2985353 NA coding protein psRNATarget
HI404353.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  ||=|**|||||||||||||||
targets:120   ACGAAAUGUAGAAGUUGAAUU   140

3.0 Sequence 2478 from Patent EP2074227 NA coding protein psRNATarget
JB164814.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  ||=|**|||||||||||||||
targets:120   ACGAAAUGUAGAAGUUGAAUU   140

3.0 Sequence 2478 from Patent EP2559767 NA coding protein psRNATarget
XM_015791653.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||**|||||||||||||||
targets:663   GCAAGAUGUAGAAGUUGAAUU   683

2.0 PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X1, mRNA FAD-dependent urate hydroxylase(LOC4343274) coding protein psRNATarget
XM_015791654.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|||**|||||||||||||||
targets:663   GCAAGAUGUAGAAGUUGAAUU   683

2.0 PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X2, mRNA FAD-dependent urate hydroxylase(LOC4343274) coding protein psRNATarget
AK061372.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  **|||=*||||||||||||||
targets:319   CAAAUUCGUAGAAGUUGAAUU   339

2.0 Oryza sativa Japonica Group cDNA clone:006-304-E12, full insert sequence NA coding protein psRNATarget
XM_015768328.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  **|||=*||||||||||||||
targets:327   CAAAUUCGUAGAAGUUGAAUU   347

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328625 (LOC4328625), mRNA uncharacterized LOC4328625(LOC4328625) coding protein psRNATarget
CT832041.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|=|**|||||||||||||||
targets:1029   GCGAGAUGUAGAAGUUGAAUU   1049

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI014D17, full insert sequence NA coding protein psRNATarget
XM_015762405.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|=|**|||||||||||||||
targets:840   GCGAGAUGUAGAAGUUGAAUU   860

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA disease resistance RPP13-like protein 4(LOC4327629) coding protein psRNATarget
XM_015762434.1
ncRNA:21   UGUUAGACAUCUUCAACUUAA   1
  =|=|**|||||||||||||||
targets:907   GCGAGAUGUAGAAGUUGAAUU   927

3.0 PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA disease resistance RPP13-like protein 4(LOC4327629) coding protein psRNATarget
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