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BaseInfo

ncRNA ID	novel_osa_miR3471
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:23190512-23190603 [+]
Reference genome	IRGSP-1.0
Source	SRR2040390
Length	21
Mature sequence(if miRNA)	72 - UGUGUCACAUCCGGUACUAGG - 92
Stem-loop(if miRNA)	--       A                 A     A     AG    A   UAGUACC GAUGUGACACAUCUUAG ACUAC AAUCU  ACAU C   ||||||| ||||||||||||||||| ||||| |||||  ||||   AUCAUGG CUACACUGUGUAGGAUU UGAUG UUAGA  UGUG C GG       C                 A     C     CU    U
Stem-loop sequence	UAGUACCAGAUGUGACACAUCUUAGAACUACAAAUCUAGACAUACCUGUGUUCAGAUUCGUAGUAUUAGGAUGUGUCACAUCCGGUACUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015759388.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   ||||||||=|||||||||||| targets:398   CCUAGUACUGGAUGUGACACA   418 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288761.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   ==||||||=|||||||||||| targets:2859   UUUAGUACUGGAUGUGACACA   2879 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067C10, full insert sequence	NA	coding protein	psRNATarget
XM_015768711.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =*||||||||||||||||||| targets:1389   UAUAGUACCGGAUGUGACACA   1409 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331223 (LOC4331223), transcript variant X2, mRNA	uncharacterized LOC4331223(LOC4331223)	coding protein	psRNATarget
XM_015768710.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =*||||||||||||||||||| targets:1402   UAUAGUACCGGAUGUGACACA   1422 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331223 (LOC4331223), transcript variant X1, mRNA	uncharacterized LOC4331223(LOC4331223)	coding protein	psRNATarget
CT835495.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*|||||||||||||||| targets:654   UCUAAUACCGGAUGUGACACA   674 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069D03, full insert sequence	NA	coding protein	psRNATarget
JB164493.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2157 from Patent EP2559767	NA	coding protein	psRNATarget
HI404032.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2157 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236162.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2157 from Patent EP2985353	NA	coding protein	psRNATarget
JB164656.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2320 from Patent EP2559767	NA	coding protein	psRNATarget
HI404195.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2320 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236325.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =|||*||||||||||||||=| targets:6   UCUAAUACCGGAUGUGACAUA   26 Target Full Sequence	2.5	Sequence 2320 from Patent EP2985353	NA	coding protein	psRNATarget
CT832625.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:963   UCUAGGAUCGGAUGUGACACA   983 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103G17, full insert sequence	NA	coding protein	psRNATarget
AK119669.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:963   UCUAGGAUCGGAUGUGACACA   983 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-149-H06, full insert sequence	NA	coding protein	psRNATarget
AK069814.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:964   UCUAGGAUCGGAUGUGACACA   984 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023031G07, full insert sequence	NA	coding protein	psRNATarget
AK119584.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:968   UCUAGGAUCGGAUGUGACACA   988 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-117-C06, full insert sequence	NA	coding protein	psRNATarget
CT832623.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:958   UCUAGGAUCGGAUGUGACACA   978 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053E04, full insert sequence	NA	coding protein	psRNATarget
CT832624.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:963   UCUAGGAUCGGAUGUGACACA   983 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053I23, full insert sequence	NA	coding protein	psRNATarget
XM_015783830.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||*|=||||||||||||| targets:1073   UCUAGGAUCGGAUGUGACACA   1093 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337946 (LOC4337946), mRNA	uncharacterized LOC4337946(LOC4337946)	coding protein	psRNATarget
AK107145.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||||=|||||||*||||| targets:1209   UCUAGUAUCGGAUGUAACACA   1229 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-124-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015782471.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   =||||||=|||||||*||||| targets:1249   UCUAGUAUCGGAUGUAACACA   1269 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339433 (LOC4339433), mRNA	uncharacterized LOC4339433(LOC4339433)	coding protein	psRNATarget
XM_015780739.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   |=|||*||=|||||||||||| targets:871   CUUAGGACUGGAUGUGACACA   891 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780740.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   |=|||*||=|||||||||||| targets:871   CUUAGGACUGGAUGUGACACA   891 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780738.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   |=|||*||=|||||||||||| targets:871   CUUAGGACUGGAUGUGACACA   891 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
LQ236010.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   ==|||*||=|||||||||||| targets:4   UUUAGAACUGGAUGUGACACA   24 Target Full Sequence	2.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
HI403880.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   ==|||*||=|||||||||||| targets:4   UUUAGAACUGGAUGUGACACA   24 Target Full Sequence	2.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
JB164341.1	ncRNA:21   GGAUCAUGGCCUACACUGUGU   1   ==|||*||=|||||||||||| targets:4   UUUAGAACUGGAUGUGACACA   24 Target Full Sequence	2.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget