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BaseInfo

ncRNA ID novel_osa_miR3466
Species Oryza sativa
Class miRNA
Genome position Chr11:26585879-26585958 [+]
Reference genome IRGSP-1.0
Source SRR2040389;SRR2040394;SRR2040402;SRR2040411;SRR2857730;SRR2857734;SRR3123645;SRR5049789;SRR5351742;SRR1738226
Length 24
Mature sequence(if miRNA) 57 - AAUAAUCGGAAACGACUUGGUACC - 80
Stem-loop(if miRNA) --      A     -     CGUUGAA   A UUAGGCAGGAU
  UACUAA UCGUU CCGAU       CCU G           G
  |||||| ||||| |||||       ||| |
  AUGGUU AGCAA GGCUA       ACC U           G
CC      C     A     ----AUA   - AGAUUGUUAUA
Stem-loop sequence UACUAAAUCGUUCCGAUCGUUGAACCUAGUUAGGCAGGAUGGAUAUUGUUAGAUCCAAUAAUCGGAAACGACUUGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK289244.1
ncRNA:24   CCAUGGUUCAGCAAAGGCUAAUAA   1
  ||||*=||*|||||||||||||||
targets:1052   GGUAAUAAAUCGUUUCCGAUUAUU   1075

2.0 Oryza sativa Japonica Group cDNA, clone: J100076P10, full insert sequence NA coding protein psRNATarget