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BaseInfo

ncRNA ID	novel_osa_miR3464
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:20300216-20300302 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR2040395
Length	24
Mature sequence(if miRNA)	1 - AUGUAAGUCAUUGUAGGAUUGCCU - 24
Stem-loop(if miRNA)	--AU              G         ----AU  -    A   G     GUAAGUCAUUGUAG AUUGCCUAU      UC AUAU AAU U     |||||||||||||| |||||||||      || |||| |||     UAUUCAGUAAUAUC UAACGGAUG      AG UAUA UUA U CCUU              G         CUAUAC  A    A   A
Stem-loop sequence	AUGUAAGUCAUUGUAGGAUUGCCUAUAUUCAUAUAAAUGUUAAUUAAUAUAGACAUAUCGUAGGCAAUGCUAUAAUGACUUAUUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015769825.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||||||*|||*|||||||||||| targets:2153   GGGCAAUACUAGAAUGACUUACAU   2176 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||||||*|||*|||||||||||| targets:2158   GGGCAAUACUAGAAUGACUUACAU   2181 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015765335.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||=|||*|||*|||||||||||| targets:1285   GGGUAAUGCUAGAAUGACUUACAU   1308 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
CT837661.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||=|||*|||*|||||||||||| targets:1285   GGGUAAUGCUAGAAUGACUUACAU   1308 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence	NA	coding protein	psRNATarget
XM_015765333.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||=|||*|||*|||||||||||| targets:2184   GGGUAAUGCUAGAAUGACUUACAU   2207 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
AK287981.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   *||=|||*|||*|||||||||||| targets:995   UGGUAAUGCUAGAAUGACUUACAU   1018 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075085P10, full insert sequence	NA	coding protein	psRNATarget
AK073905.1	ncRNA:24   UCCGU-UAGGAUGUUACUGAAUGUA   1   **|||-||*|||||||||||||||| targets:249   CUGCAGAUACUACAAUGACUUACAU   273 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033075M04, full insert sequence	NA	coding protein	psRNATarget
AK099664.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   |||*|||*|||*|||||||||||| targets:2040   AGGAAAUGCUAGAAUGACUUACAU   2063 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013066P07, full insert sequence	NA	coding protein	psRNATarget
AK066359.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   |||*|||*|||*|||||||||||| targets:2040   AGGAAAUGCUAGAAUGACUUACAU   2063 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013066O06, full insert sequence	NA	coding protein	psRNATarget
XM_015774902.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   |||*|||*|||*|||||||||||| targets:2099   AGGAAAUGCUAGAAUGACUUACAU   2122 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4333557), mRNA	beclin-1-like protein(LOC4333557)	coding protein	psRNATarget
AK241002.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =*|*|||*|||||||||||||||| targets:1700   GAGAAAUGCUACAAUGACUUACAU   1723 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065053D12, full insert sequence	NA	coding protein	psRNATarget
AK073227.1	ncRNA:24   UC-CGUUAGGAUGUUACUGAAUGUA   1   ||-|*=||*|||||||||||||||| targets:665   AGUGAGAUACUACAAUGACUUACAU   689 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033024H06, full insert sequence	NA	coding protein	psRNATarget
XM_015781748.1	ncRNA:24   UC-CGUUAGGAUGUUACUGAAUGUA   1   ||-|*=||*|||||||||||||||| targets:684   AGUGAGAUACUACAAUGACUUACAU   708 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group kelch domain-containing protein 4 (LOC4336203), transcript variant X1, mRNA	kelch domain-containing protein 4(LOC4336203)	coding protein	psRNATarget
XM_015763581.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =***|||*|||||||||||||||| targets:1766   GAAAAAUGCUACAAUGACUUACAU   1789 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group benzyl alcohol O-benzoyltransferase-like (LOC107276754), mRNA	benzyl alcohol O-benzoyltransferase-like(LOC107276754)	coding protein	psRNATarget
CT833788.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:442   GGGAAAUACUAGAAUGACUUACAU   465 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058L20, full insert sequence	NA	coding protein	psRNATarget
CT833789.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:441   GGGAAAUACUAGAAUGACUUACAU   464 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032F14, full insert sequence	NA	coding protein	psRNATarget
CT831392.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:501   GGGAAAUGCUAGAAUGACUUACAU   524 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence	NA	coding protein	psRNATarget
XM_015783507.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:854   GGGAAAUGCUAAAAUGACUUACAU   877 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA	ethylene-responsive transcription factor ERF014-like(LOC107277887)	coding protein	psRNATarget
AK242637.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:686   GGGAAAUACUAAAAUGACUUACAU   709 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090023H18, full insert sequence	NA	coding protein	psRNATarget
CT834553.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:942   GGGAAAUGCUAAAAUGACUUACAU   965 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence	NA	coding protein	psRNATarget
CT837490.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:926   GGGAAAUGCUAAAAUGACUUACAU   949 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence	NA	coding protein	psRNATarget
AK069119.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1038   GGGAAAUGCUAAAAUGACUUACAU   1061 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence	NA	coding protein	psRNATarget
CT832752.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1006   GGGAAAUGCUAAAAUGACUUACAU   1029 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence	NA	coding protein	psRNATarget
XM_015774602.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1069   GGGAAAUGCUAAAAUGACUUACAU   1092 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA	protein app1(LOC4334321)	coding protein	psRNATarget
XM_015792529.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:33   GGGAAAUGCUAGAAUGACUUACAU   56 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate synthase 6 (LOC4343863), transcript variant X1, mRNA	dehydrodolichyl diphosphate synthase 6(LOC4343863)	coding protein	psRNATarget
XM_015795143.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1364   GGGAAAUACUAGAAUGACUUACAU   1387 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tetraketide alpha-pyrone reductase 1 (LOC4346033), mRNA	tetraketide alpha-pyrone reductase 1(LOC4346033)	coding protein	psRNATarget
AK288854.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:285   GGGAAAUACUAAAAUGACUUACAU   308 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090075O17, full insert sequence	NA	coding protein	psRNATarget
XM_015785393.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1616   GGGAAAUGCUAGAAUGACUUACAU   1639 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate mutase-like protein AT74H (LOC4339877), mRNA	phosphoglycerate mutase-like protein AT74H(LOC4339877)	coding protein	psRNATarget
XM_015760082.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1583   GGGAAAUGCUAGAAUGACUUACAU   1606 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA	putative protease Do-like 14(LOC4350193)	coding protein	psRNATarget
XM_015778179.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1717   GGGAAAUGCUAGAAUGACUUACAU   1740 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA	methylthioribose kinase 2(LOC107276080)	coding protein	psRNATarget
AK099681.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1853   GGGAAAUGCUAGAAUGACUUACAU   1876 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071F22, full insert sequence	NA	coding protein	psRNATarget
XM_015795234.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1844   GGGAAAUGCUAGAAUGACUUACAU   1867 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group glycoprotein 3-alpha-L-fucosyltransferase A (LOC4345809), mRNA	glycoprotein 3-alpha-L-fucosyltransferase A(LOC4345809)	coding protein	psRNATarget
AK106303.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1636   GGGAAAUACUAGAAUGACUUACAU   1659 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-101-C07, full insert sequence	NA	coding protein	psRNATarget
AK102955.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:858   GGGAAAUGCUAAAAUGACUUACAU   881 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence	NA	coding protein	psRNATarget
AK318560.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1178   GGGAAAUGCUAGAAUGACUUACAU   1201 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075170N13, full insert sequence	NA	coding protein	psRNATarget
XM_015788932.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:2964   GGGAAAUGCUAGAAUGACUUACAU   2987 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group kanadaptin (LOC4340752), mRNA	kanadaptin(LOC4340752)	coding protein	psRNATarget
AK288872.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1865   GGGAAAUGCUAGAAUGACUUACAU   1888 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I05, full insert sequence	NA	coding protein	psRNATarget
AK288390.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:590   GGGAAAUGCUAGAAUGACUUACAU   613 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
XM_015783728.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:2889   GGGAAAUGCUAGAAUGACUUACAU   2912 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA	uncharacterized LOC9271594(LOC9271594)	coding protein	psRNATarget
XM_015780917.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:4769   GGGAAAUGCUAAAAUGACUUACAU   4792 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:4818   GGGAAAUGCUAAAAUGACUUACAU   4841 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780916.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:4827   GGGAAAUGCUAAAAUGACUUACAU   4850 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015764832.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1278   GGGGAAUGCUAGAAUGACUUACAU   1301 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC107276755), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At3g47570(LOC107276755)	coding protein	psRNATarget
AK289039.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:130   GGGAAAUGCUAGAAUGACUUACAU   153 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence	NA	coding protein	psRNATarget
XM_015778291.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:124   GGGAAAUGCUAGAAUGACUUACAU   147 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA	protein LURP-one-related 6(LOC4335964)	coding protein	psRNATarget
XM_015787270.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   =||*|||*|||*|||||||||||| targets:1630   GGGAAAUACUAGAAUGACUUACAU   1653 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
AK065333.1	ncRNA:24   UCCGUUAGGAUGUUACUGAAUGUA   1   *|**|||==|*||||||||||||| targets:570   UGUGAAUUUUUCAAUGACUUACAU   593 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013000P11, full insert sequence	NA	coding protein	psRNATarget