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BaseInfo

ncRNA ID novel_osa_miR3463
Species Oryza sativa
Class miRNA
Genome position Chr9:19747294-19747474 [+]
Reference genome IRGSP-1.0
Source SRR2040389;SRR2040393;SRR2040395;SRR2040404;SRR2040410;SRR2857731
Length 24
Mature sequence(if miRNA) 158 - ACUUAAAACAGUUUGACUUUGACC - 181
Stem-loop(if miRNA) --     A       AC     A                AAC   U            AUAAU     AU   U  C    GAUC    AUU
  UCAAA UCAAACU  UUUAA UUUGACUAAGUUUAUA   AAA AUAAUAAUAUUU     ACCAA  UAG UU AUUA    AAUA   A
  ||||| |||||||  ||||| ||||||||||||||||   ||| ||||||||||||     |||||  ||| || ||||    ||||
  AGUUU AGUUUGA  AAAUU AAACUGAUUCAAAUAU   UUU UAUUAUUGUAAA     UGGUU  AUU AA UAAU    UUAU   A
CC     C       CA     C                -CU   U            --AGU     CU   U  A    AUUC    AUA
Stem-loop sequence UCAAAAUCAAACUACUUUAAAUUUGACUAAGUUUAUAAACAAAUAUAAUAAUAUUUAUAAUACCAAAUUAGUUUCAUUAGAUCAAUAAUUAAAUAUAUUCUUAUAAUAAAUUUAUCUUGGUUGAAAAUGUUAUUAUUUUUUCUAUAAACUUAGUCAAACUUAAAACAGUUUGACUUUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015755259.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  ||||||||||||||||||||||||
targets:809   GGUCAAAGUCAAACUGUUUUAAGU   832

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA uncharacterized LOC4346670(LOC4346670) coding protein psRNATarget
AK120395.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||||||||||||=||||||||||
targets:730   GGUCAAAGUCAAAUUGUUUUAAGU   753

1.5 Oryza sativa Japonica Group cDNA clone:J013075G01, full insert sequence NA coding protein psRNATarget
CT837874.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||*||||||||||||||||||||
targets:148   GGUGAAAGUCAAACUGUUUUAAGU   171

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence NA coding protein psRNATarget
AK288440.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||||||*||||||||||||||||
targets:1210   GGUCAAAAUCAAACUGUUUUAAGU   1233

1.0 Oryza sativa Japonica Group cDNA, clone: J090034G20, full insert sequence NA coding protein psRNATarget
AK288994.1
ncRNA:24   CCAGUUUCAGUUUGAC-AAAAUUCA   1
  *|||||||||||||||-||||||||
targets:1366   AGUCAAAGUCAAACUGCUUUUAAGU   1390

3.0 Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence NA coding protein psRNATarget
XM_015793424.1
ncRNA:24   CCAGUUUCAGUUUGAC-AAAAUUCA   1
  |||*||||||||||||-||||||||
targets:1677   GGUGAAAGUCAAACUGCUUUUAAGU   1701

3.0 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 85A2 (LOC4345521), mRNA UDP-glycosyltransferase 85A2(LOC4345521) coding protein psRNATarget
AK288635.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||||||*||||||||||||||*|
targets:405   GGUCAAAAUCAAACUGUUUUAAAU   428

2.5 Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence NA coding protein psRNATarget
AK241906.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||||||*|||||||||||*||||
targets:942   GGUCAAAUUCAAACUGUUUCAAGU   965

2.5 Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence NA coding protein psRNATarget
AK242901.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  ||||||||*||||||||||*||||
targets:1272   GGUCAAAGACAAACUGUUUCAAGU   1295

2.5 Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence NA coding protein psRNATarget
XM_015788305.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  ||||||||*||||||||||*||||
targets:1322   GGUCAAAGACAAACUGUUUCAAGU   1345

2.5 PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA F-box/FBD/LRR-repeat protein At1g13570(LOC4340210) coding protein psRNATarget
AK288358.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |*|||||||||||||||||*||||
targets:899   GCUCAAAGUCAAACUGUUUCAAGU   922

1.5 Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence NA coding protein psRNATarget
XM_015779641.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |||=*||||||||||*||||||||
targets:2004   GGUUCAAGUCAAACUAUUUUAAGU   2027

1.5 PREDICTED: Oryza sativa Japonica Group tyrosine N-monooxygenase (LOC4335062), mRNA tyrosine N-monooxygenase(LOC4335062) coding protein psRNATarget
AK065615.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |*|||||||=||||||||||||*|
targets:2848   GAUCAAAGUUAAACUGUUUUAAAU   2871

2.5 Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence NA coding protein psRNATarget
AK288313.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  |*|||||||=||||||*|||||||
targets:853   GAUCAAAGUUAAACUGCUUUAAGU   876

2.5 Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence NA coding protein psRNATarget
XM_015760540.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  ***|||||*|||||||||||||||
targets:1046   ACACAAAGACAAACUGUUUUAAGU   1069

1.0 PREDICTED: Oryza sativa Japonica Group dirigent protein 19 (LOC4350075), mRNA dirigent protein 19(LOC4350075) coding protein psRNATarget
AK067908.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  **|||||||||||*|||||||||*
targets:1682   UUUCAAAGUCAAAAUGUUUUAAGG   1705

2.5 Oryza sativa Japonica Group cDNA clone:J013126N07, full insert sequence NA coding protein psRNATarget
XM_015795749.1
ncRNA:24   CCAGUUUCAGUUUGACAAAAUUCA   1
  **|||||||||||*|||||||||*
targets:1829   UUUCAAAGUCAAAAUGUUUUAAGG   1852

2.5 PREDICTED: Oryza sativa Japonica Group hexose carrier protein HEX6 (LOC4346567), mRNA hexose carrier protein HEX6(LOC4346567) coding protein psRNATarget
AK243090.1
ncRNA:24   CCA-GUUUCAGUUUGACAAAAUUCA   1
  *||-|*|||||||||||||||||*|
targets:960   AGUGCCAAGUCAAACUGUUUUAAUU   984

1.5 Oryza sativa Japonica Group cDNA, clone: J100022L23, full insert sequence NA coding protein psRNATarget
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