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BaseInfo

ncRNA ID	novel_osa_miR3460
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:11400951-11401069 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - GAAACUGUGAGACGAAUUUAUUAA - 24
Stem-loop(if miRNA)	--    C       C      A      C     AAUU      ----      ----A     A   GAAA UGUGAGA GAAUUU UUAAGC UAAUU    CGUCAU    UAGCAA     UGUUU C   |||| ||||||| |||||| |||||| |||||    ||||||    ||||||     |||||   CUUU AUGCUCU CUUAGA AAUUUG AUUAA    GCAGUA    AUUGUU     ACGAG U UU    A       A      A      C     ---C      CUAA      ACACC     G
Stem-loop sequence	GAAACUGUGAGACGAAUUUAUUAAGCCUAAUUAAUUCGUCAUUAGCAAAUGUUUACUGGAGCACCACAUUGUUAAAUCAUGACGCAAUUACGUUUAAAAGAUUCAUCUCGUAAUUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288471.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||| targets:1774   UUAAUAAAUUCGUCUCGCAGUUUC   1797 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||= targets:2214   UUAAUAAAUUCGUCUCGCAGUUUU   2237 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK288184.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||= targets:958   UUAAUAAAUUCGUCUCGCAGUUUU   981 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
AK288216.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:723   UUAAUAAAUUCGUCUCGCAGUUUA   746 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:718   UUAAUAAAUUCGUCUCGCAGUUUA   741 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
XM_015780200.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:42   UUAAUAAAUUCGUCUCGCAGUUUA   65 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC4336891), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC4336891)	coding protein	psRNATarget
AK067578.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:1761   UUAAUAAAUUCGUCUCGCAGUUUA   1784 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:839   UUAAUAAAUUCGUCUCGCAGUUUA   862 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||=||||||* targets:1525   UUAAUAAAUUCGUCUCGCAGUUUA   1548 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   *|||||||||||||||=||||||* targets:907   CUAAUAAAUUCGUCUCGCAGUUUA   930 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   ||||||||||||||||*||||||* targets:2821   UUAAUAAAUUCGUCUCUCAGUUUA   2844 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK067679.1	ncRNA:24   AAUUAUUUAAGCAGAGUGUCAAAG   1   |||||||||||*|||||||||||* targets:2189   UUAAUAAAUUCAUCUCACAGUUUA   2212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence	NA	coding protein	psRNATarget