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BaseInfo

ncRNA ID	novel_osa_miR3459
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:8654365-8654452 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	23
Mature sequence(if miRNA)	66 - UUAACCGGGACUAAAGAUCAUUU - 88
Stem-loop(if miRNA)	--          A       GUGU       ACCG  A   AAGAU   AUGAUUUUUA UCCCGGU    AACACCA    GG CUA     C   |||||||||| |||||||    |||||||    || |||   UACUAGAAAU AGGGCCA    UUGUGGU    UC GAU     A UU          C       AUUU       ---G  -   AAAAU
Stem-loop sequence	AUGAUUUUUAAUCCCGGUGUGUAACACCAACCGGGACUAAAGAUCAUAAAAUAGCUGUGGUGUUUUUAACCGGGACUAAAGAUCAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK061057.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ||||||||||||||||||||||| targets:244   AAAUGAUCUUUAGUCCCGGUUAA   266 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ||||||||||||||||||||||= targets:2377   AAAUGAUCUUUAGUCCCGGUUAG   2399 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |||||||||||||||||||||=| targets:421   AAAUGAUCUUUAGUCCCGGUUGA   443 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:23   UUUAC-UAGAAAUCAGGGCCAAUU   1   |=|||-|||||||||||||||||* targets:638   AGAUGGAUCUUUAGUCCCGGUUAU   661 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   *=|*|||||||||||||||||== targets:551   CGAGGAUCUUUAGUCCCGGUUGG   573 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |=|||||=|||||||||||||=| targets:1587   AGAUGAUUUUUAGUCCCGGUUGA   1609 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ||||*||||||||||||||||*| targets:1645   AAAUCAUCUUUAGUCCCGGUUCA   1667 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   *=|*|||||||||||||||||== targets:1696   CGAGGAUCUUUAGUCCCGGUUGG   1718 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK105552.1	ncRNA:23   UUUA-CUAGAAAUCAGGGCCAAUU   1   ||||-||||||||||||||||||= targets:1268   AAAUAGAUCUUUAGUCCCGGUUAG   1291 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   *||||||||||||||||||||== targets:139   UAAUGAUCUUUAGUCCCGGUUGG   161 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
XM_015774888.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |||||||||*|||||||||||=| targets:1383   AAAUGAUCUCUAGUCCCGGUUGA   1405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |||||||||*|||||||||||=| targets:1389   AAAUGAUCUCUAGUCCCGGUUGA   1411 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288859.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |||*|||||||||||||||||=| targets:2193   AAAAGAUCUUUAGUCCCGGUUGA   2215 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
HI404286.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   =*||||||||||||||||||||= targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60 Target Full Sequence	1.0	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   =*||||||||||||||||||||= targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60 Target Full Sequence	1.0	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   =*||||||||||||||||||||= targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60 Target Full Sequence	1.0	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
AK288405.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |=||*||=||||||||||||||| targets:2345   AGAUUAUUUUUAGUCCCGGUUAA   2367 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:23   UUU----ACUAGAAAUCAGGGCCAAUU   1   |||----||||||||||||||||||== targets:965   AAAGUGCUGAUCUUUAGUCCCGGUUGG   991 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288734.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |**||||||||||||||||||== targets:43   AUUUGAUCUUUAGUCCCGGUUGG   65 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:23   UUU-----ACUAGAAAUCAGGGCCAAUU   1   =||-----||||||||||||||||||=* targets:1553   GAACUUUUUGAUCUUUAGUCCCGGUUGU   1580 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ****|||||||||||||||||=| targets:1785   CCUAGAUCUUUAGUCCCGGUUGA   1807 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   *=|*|||||||||||||||||== targets:1904   UGACGAUCUUUAGUCCCGGUUGG   1926 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ****|||||||||||||||||=| targets:1256   CUCGGAUCUUUAGUCCCGGUUGA   1278 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK065634.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   |||*|*|=||||||||||||||= targets:1818   AAACGCUUUUUAGUCCCGGUUAG   1840 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
XM_015759969.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ==||*||||||||||||||||*| targets:1867   GGAUCAUCUUUAGUCCCGGUUCA   1889 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015759968.1	ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1   ==||*||||||||||||||||*| targets:3365   GGAUCAUCUUUAGUCCCGGUUCA   3387 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget